miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26456 5' -53.1 NC_005357.1 + 34761 0.7 0.568449
Target:  5'- cGcCGCCAaagaacggcgcguguACGGCAagGAgcCGGCGUGGg -3'
miRNA:   3'- aCaGCGGU---------------UGCUGUagCU--GUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 34689 0.69 0.631215
Target:  5'- cGUCGCCAACaGCAagcCGGCcgccgAGCGUGc -3'
miRNA:   3'- aCAGCGGUUGcUGUa--GCUG-----UCGCACc -5'
26456 5' -53.1 NC_005357.1 + 34424 0.66 0.763171
Target:  5'- cUGgCGCCAAgGGCAcgucCGACGcCGUGGu -3'
miRNA:   3'- -ACaGCGGUUgCUGUa---GCUGUcGCACC- -5'
26456 5' -53.1 NC_005357.1 + 34134 0.66 0.763171
Target:  5'- --cCGCUGGCuGCAcugcccCGGCAGCGUGGc -3'
miRNA:   3'- acaGCGGUUGcUGUa-----GCUGUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 33917 0.76 0.274821
Target:  5'- -uUCGCCGGCGACAUCagGGCAucGaCGUGGa -3'
miRNA:   3'- acAGCGGUUGCUGUAG--CUGU--C-GCACC- -5'
26456 5' -53.1 NC_005357.1 + 33077 0.72 0.457303
Target:  5'- gGUCGCgCAGCGACG-CGGCGGCc--- -3'
miRNA:   3'- aCAGCG-GUUGCUGUaGCUGUCGcacc -5'
26456 5' -53.1 NC_005357.1 + 32426 0.67 0.698413
Target:  5'- cGUCuGCCAA-GACGaCGGCAGCGa-- -3'
miRNA:   3'- aCAG-CGGUUgCUGUaGCUGUCGCacc -5'
26456 5' -53.1 NC_005357.1 + 30379 0.67 0.73126
Target:  5'- cGgCGCCAuCGACuUCGACAcGC-UGGg -3'
miRNA:   3'- aCaGCGGUuGCUGuAGCUGU-CGcACC- -5'
26456 5' -53.1 NC_005357.1 + 29996 0.76 0.260847
Target:  5'- ---gGUCGGCGACAUCGACAGCGc-- -3'
miRNA:   3'- acagCGGUUGCUGUAGCUGUCGCacc -5'
26456 5' -53.1 NC_005357.1 + 29960 0.7 0.541976
Target:  5'- uUGUCGUC-GCGGCGcaCGACGGCcUGGa -3'
miRNA:   3'- -ACAGCGGuUGCUGUa-GCUGUCGcACC- -5'
26456 5' -53.1 NC_005357.1 + 28746 0.68 0.664959
Target:  5'- --aCGCCGACGACAUCcucACGGUGcgcGGu -3'
miRNA:   3'- acaGCGGUUGCUGUAGc--UGUCGCa--CC- -5'
26456 5' -53.1 NC_005357.1 + 28668 0.69 0.608704
Target:  5'- --gUGCCGGCGGCcUCGcCAGCGcGGc -3'
miRNA:   3'- acaGCGGUUGCUGuAGCuGUCGCaCC- -5'
26456 5' -53.1 NC_005357.1 + 28558 0.69 0.596354
Target:  5'- gGcCGCCGgccaucgcggcGCGcACGUCGgccaccgGCAGCGUGGu -3'
miRNA:   3'- aCaGCGGU-----------UGC-UGUAGC-------UGUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 28039 0.7 0.564012
Target:  5'- cGUCGCCGaagaacacgucgGCGACGgucugcUCGAaCAGCG-GGc -3'
miRNA:   3'- aCAGCGGU------------UGCUGU------AGCU-GUCGCaCC- -5'
26456 5' -53.1 NC_005357.1 + 27594 0.78 0.194125
Target:  5'- gGcCGCCAACGGCAUCGACcugGGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUAGCUG---UCGCacc -5'
26456 5' -53.1 NC_005357.1 + 27146 0.71 0.47785
Target:  5'- cUGUCGCCGaaAUGGgG-CGACAGCG-GGc -3'
miRNA:   3'- -ACAGCGGU--UGCUgUaGCUGUCGCaCC- -5'
26456 5' -53.1 NC_005357.1 + 26864 0.67 0.698413
Target:  5'- cGUCGUCAcugacgGCGcCAUUGACcuGGaCGUGGa -3'
miRNA:   3'- aCAGCGGU------UGCuGUAGCUG--UC-GCACC- -5'
26456 5' -53.1 NC_005357.1 + 25139 0.67 0.709446
Target:  5'- aUGcgCGCCcGCGGCGcCGGCuuCGUGGa -3'
miRNA:   3'- -ACa-GCGGuUGCUGUaGCUGucGCACC- -5'
26456 5' -53.1 NC_005357.1 + 24552 0.67 0.698413
Target:  5'- gGUCGCgCAGCG-CggCGAUGGCGaGGc -3'
miRNA:   3'- aCAGCG-GUUGCuGuaGCUGUCGCaCC- -5'
26456 5' -53.1 NC_005357.1 + 23252 0.7 0.575121
Target:  5'- cGaCGCCGGCGGCAcgGGCAGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUagCUGUCGCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.