Results 41 - 60 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26456 | 5' | -53.1 | NC_005357.1 | + | 23098 | 0.72 | 0.417692 |
Target: 5'- cGaCGCCAACGGCGgcgcccacggCGACAGCGg-- -3' miRNA: 3'- aCaGCGGUUGCUGUa---------GCUGUCGCacc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 22422 | 0.68 | 0.653728 |
Target: 5'- -uUCGCCAGCcACGccUUGACGGCGgcGGa -3' miRNA: 3'- acAGCGGUUGcUGU--AGCUGUCGCa-CC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 22072 | 0.7 | 0.529978 |
Target: 5'- gGUCGCgGucggcgcGCGGC-UCGAUGGCGUGa -3' miRNA: 3'- aCAGCGgU-------UGCUGuAGCUGUCGCACc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 20609 | 0.69 | 0.631215 |
Target: 5'- -uUCGCCAgGCGGCGUCGcagguCGGUGUcGGc -3' miRNA: 3'- acAGCGGU-UGCUGUAGCu----GUCGCA-CC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 19928 | 0.66 | 0.793816 |
Target: 5'- uUGUCGCCGcCGAacuccuuGUCGGC--CGUGGa -3' miRNA: 3'- -ACAGCGGUuGCUg------UAGCUGucGCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 19626 | 0.73 | 0.389392 |
Target: 5'- gGUCaugcggGCC-GCGACAUCGGcCAGCGUcGGg -3' miRNA: 3'- aCAG------CGGuUGCUGUAGCU-GUCGCA-CC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 19593 | 0.67 | 0.752659 |
Target: 5'- cG-CGCUGuCGGCuGUCGGCAGCGcGGc -3' miRNA: 3'- aCaGCGGUuGCUG-UAGCUGUCGCaCC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 19325 | 0.72 | 0.43724 |
Target: 5'- cUGUCGCCGugGGCGccgcCGuuGGCGUcGGg -3' miRNA: 3'- -ACAGCGGUugCUGUa---GCugUCGCA-CC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 19070 | 0.69 | 0.597476 |
Target: 5'- --aCGCCAcCGuguuCAUCGGCGGCGaGGc -3' miRNA: 3'- acaGCGGUuGCu---GUAGCUGUCGCaCC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 19049 | 0.85 | 0.063302 |
Target: 5'- gGcCGCCGGCGGCGUCGAuCAGCGUGu -3' miRNA: 3'- aCaGCGGUUGCUGUAGCU-GUCGCACc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 18884 | 0.73 | 0.398685 |
Target: 5'- aUGUCgGCCGAgGcCAUCGACcGCGUGc -3' miRNA: 3'- -ACAG-CGGUUgCuGUAGCUGuCGCACc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 18763 | 0.67 | 0.740947 |
Target: 5'- -uUUGCCGGCGAuuucuucCAUCGuCAGCGUcgaGGc -3' miRNA: 3'- acAGCGGUUGCU-------GUAGCuGUCGCA---CC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 18467 | 0.67 | 0.73126 |
Target: 5'- cGgCGCCGGCGGCGUCGGCcGauucguccacCGUGa -3' miRNA: 3'- aCaGCGGUUGCUGUAGCUGuC----------GCACc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 16437 | 0.74 | 0.328432 |
Target: 5'- -aUCGCCGGCGGCGUUGAacaCGGCGUc- -3' miRNA: 3'- acAGCGGUUGCUGUAGCU---GUCGCAcc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 15258 | 0.68 | 0.664959 |
Target: 5'- gGUCGUCGA-GGCAUCcGCGugcggcGCGUGGg -3' miRNA: 3'- aCAGCGGUUgCUGUAGcUGU------CGCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 14981 | 0.76 | 0.274821 |
Target: 5'- gGUCGCCAgaAUGGCGUCGGCAuugGCGUu- -3' miRNA: 3'- aCAGCGGU--UGCUGUAGCUGU---CGCAcc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 14201 | 0.7 | 0.552961 |
Target: 5'- aGUCcgacCCGcGCGugGUCGuCGGCGUGGc -3' miRNA: 3'- aCAGc---GGU-UGCugUAGCuGUCGCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 13932 | 0.67 | 0.698413 |
Target: 5'- aUGUCGCgCAGCGcCGUgGACuggaugcccucGGaCGUGGa -3' miRNA: 3'- -ACAGCG-GUUGCuGUAgCUG-----------UC-GCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 13722 | 0.68 | 0.653728 |
Target: 5'- cGUgCGCCGACaGCAUCGACcuUGUGa -3' miRNA: 3'- aCA-GCGGUUGcUGUAGCUGucGCACc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 13616 | 0.66 | 0.793816 |
Target: 5'- -cUUGCCGACaGCAUCGGUAGCGg-- -3' miRNA: 3'- acAGCGGUUGcUGUAGCUGUCGCacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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