miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26457 3' -54.6 NC_005357.1 + 25987 0.69 0.494011
Target:  5'- ---aCGACGCCGUGuucaacGCcGCCGGCGAu -3'
miRNA:   3'- uguaGCUGCGGCAC------CGaUGGUUGCUc -5'
26457 3' -54.6 NC_005357.1 + 36877 0.67 0.63702
Target:  5'- cCGUCGAUaCCGUGGCgggcgACCuggGCGGa -3'
miRNA:   3'- uGUAGCUGcGGCACCGa----UGGu--UGCUc -5'
26457 3' -54.6 NC_005357.1 + 24802 0.66 0.703967
Target:  5'- cGCGUUGAaguCGCCGUacagcaucuGGCUGCgCAAUGGc -3'
miRNA:   3'- -UGUAGCU---GCGGCA---------CCGAUG-GUUGCUc -5'
26457 3' -54.6 NC_005357.1 + 25095 0.69 0.51527
Target:  5'- cGCGccCGGCGCCGUGGgauaCAGCGGGu -3'
miRNA:   3'- -UGUa-GCUGCGGCACCgaugGUUGCUC- -5'
26457 3' -54.6 NC_005357.1 + 22008 0.69 0.51527
Target:  5'- uCGUCGGCGCC-UGGCUcgaaauagACCGACu-- -3'
miRNA:   3'- uGUAGCUGCGGcACCGA--------UGGUUGcuc -5'
26457 3' -54.6 NC_005357.1 + 12007 0.7 0.423095
Target:  5'- cACGUCGGCcagcagcgcgGCCGUGGC---CGGCGAGg -3'
miRNA:   3'- -UGUAGCUG----------CGGCACCGaugGUUGCUC- -5'
26457 3' -54.6 NC_005357.1 + 1696 0.71 0.367419
Target:  5'- -aGUCGAgaaauuCGCCGUgGGCcggcgUGCCGGCGAGg -3'
miRNA:   3'- ugUAGCU------GCGGCA-CCG-----AUGGUUGCUC- -5'
26457 3' -54.6 NC_005357.1 + 9856 0.72 0.358643
Target:  5'- gGCGUCGAUGagCGUGGC-ACCGGCGc- -3'
miRNA:   3'- -UGUAGCUGCg-GCACCGaUGGUUGCuc -5'
26457 3' -54.6 NC_005357.1 + 14840 0.76 0.202923
Target:  5'- -gGUCGAUGCCGuUGGCgGCCAGCGc- -3'
miRNA:   3'- ugUAGCUGCGGC-ACCGaUGGUUGCuc -5'
26457 3' -54.6 NC_005357.1 + 37540 0.76 0.202371
Target:  5'- aACAUCGAaggaCGCaugauugCGUGGCUcGCCGGCGAGg -3'
miRNA:   3'- -UGUAGCU----GCG-------GCACCGA-UGGUUGCUC- -5'
26457 3' -54.6 NC_005357.1 + 21328 0.68 0.543438
Target:  5'- gGC-UUGAUGCCGgccaccgcgcccaGGUUGCCAACGAa -3'
miRNA:   3'- -UGuAGCUGCGGCa------------CCGAUGGUUGCUc -5'
26457 3' -54.6 NC_005357.1 + 41710 0.68 0.579872
Target:  5'- gGCGcUCGACuugGCCGUGGCcgacaagaucaUcaaggaaaacccaGCCAGCGAGg -3'
miRNA:   3'- -UGU-AGCUG---CGGCACCG-----------A-------------UGGUUGCUC- -5'
26457 3' -54.6 NC_005357.1 + 32656 0.66 0.703967
Target:  5'- --uUCGGCGCCGcgaaGCUGCCcGACGuGa -3'
miRNA:   3'- uguAGCUGCGGCac--CGAUGG-UUGCuC- -5'
26457 3' -54.6 NC_005357.1 + 24628 0.66 0.703967
Target:  5'- cACGUCGAa-CCacaUGGCgUGCCGGCGGGc -3'
miRNA:   3'- -UGUAGCUgcGGc--ACCG-AUGGUUGCUC- -5'
26457 3' -54.6 NC_005357.1 + 36033 0.66 0.681819
Target:  5'- gACAUCaccgagGGCGCCGcGGCgGCCGACc-- -3'
miRNA:   3'- -UGUAG------CUGCGGCaCCGaUGGUUGcuc -5'
26457 3' -54.6 NC_005357.1 + 18411 0.66 0.681819
Target:  5'- cACGUCGGCGaagGUGGCguuguCCGcCGAGu -3'
miRNA:   3'- -UGUAGCUGCgg-CACCGau---GGUuGCUC- -5'
26457 3' -54.6 NC_005357.1 + 5346 0.67 0.648254
Target:  5'- -uGUCGAUGUCGuUGGCgacaGCCAACa-- -3'
miRNA:   3'- ugUAGCUGCGGC-ACCGa---UGGUUGcuc -5'
26457 3' -54.6 NC_005357.1 + 35982 0.67 0.63702
Target:  5'- gACggCGACGCCuucgcgggcgGUGGUgucGCgAGCGAGg -3'
miRNA:   3'- -UGuaGCUGCGG----------CACCGa--UGgUUGCUC- -5'
26457 3' -54.6 NC_005357.1 + 5638 0.67 0.592141
Target:  5'- gGCGagGugGCCGUacacGGCggaaACCAGCGGu -3'
miRNA:   3'- -UGUagCugCGGCA----CCGa---UGGUUGCUc -5'
26457 3' -54.6 NC_005357.1 + 29925 0.67 0.592141
Target:  5'- cGCAUCagUGCCGUGGCUuGCCAGucAGg -3'
miRNA:   3'- -UGUAGcuGCGGCACCGA-UGGUUgcUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.