Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26458 | 3' | -51.8 | NC_005357.1 | + | 18365 | 0.68 | 0.720455 |
Target: 5'- gUUUGCCGGCGgcgAGgUUGGCCuuGCCGa -3' miRNA: 3'- uGAGCGGCUGU---UUgAAUCGGcuUGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 31506 | 0.68 | 0.731504 |
Target: 5'- uGC-CGCCGGCGuGCU--GCUGGGCCu -3' miRNA: 3'- -UGaGCGGCUGUuUGAauCGGCUUGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 37820 | 0.66 | 0.843126 |
Target: 5'- --cCGCCGACAucauc-GCCGAgGCCGa -3' miRNA: 3'- ugaGCGGCUGUuugaauCGGCU-UGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 23759 | 0.66 | 0.843126 |
Target: 5'- --aUGCCGGCGccACcgGGCCGAugCGc -3' miRNA: 3'- ugaGCGGCUGUu-UGaaUCGGCUugGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 679 | 0.66 | 0.843126 |
Target: 5'- gGC-CGCCuACGgcGGCgccGGCCGGGCCGc -3' miRNA: 3'- -UGaGCGGcUGU--UUGaa-UCGGCUUGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 26071 | 0.66 | 0.843126 |
Target: 5'- --gCGCuCGGCGAACUcgGGgCGGGCCu -3' miRNA: 3'- ugaGCG-GCUGUUUGAa-UCgGCUUGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 18465 | 0.66 | 0.842219 |
Target: 5'- cGCggCGCCGGC-GGCgucGGCCGAuucguccACCGu -3' miRNA: 3'- -UGa-GCGGCUGuUUGaa-UCGGCU-------UGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 37174 | 0.67 | 0.795083 |
Target: 5'- cGCaUUGCCGACcccGACcugccGGCCGAACUGc -3' miRNA: 3'- -UG-AGCGGCUGu--UUGaa---UCGGCUUGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 18578 | 0.67 | 0.795083 |
Target: 5'- cGCUCGCgGugAcGGCcUGGCCGu-CCGa -3' miRNA: 3'- -UGAGCGgCugU-UUGaAUCGGCuuGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 1182 | 0.67 | 0.774494 |
Target: 5'- uCUCGCCGcCGGGgUcGGCCGggUUGu -3' miRNA: 3'- uGAGCGGCuGUUUgAaUCGGCuuGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 4822 | 0.67 | 0.753267 |
Target: 5'- uGCUgGCCGGCGAcaggucGCcgUAGUCGAugACCa -3' miRNA: 3'- -UGAgCGGCUGUU------UGa-AUCGGCU--UGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 17084 | 0.68 | 0.742446 |
Target: 5'- gGCgaaGCCGGCGcgguuCUcGGCCGGGCCu -3' miRNA: 3'- -UGag-CGGCUGUuu---GAaUCGGCUUGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 37565 | 0.73 | 0.422857 |
Target: 5'- gGCUCGCCGGCGAggauuggaaGC-UGGCCGcuuuCCGu -3' miRNA: 3'- -UGAGCGGCUGUU---------UGaAUCGGCuu--GGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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