Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26458 | 3' | -51.8 | NC_005357.1 | + | 16793 | 0.67 | 0.795083 |
Target: 5'- aACUCGCCGAgGugGACgcgcuGCUGGcgACCGc -3' miRNA: 3'- -UGAGCGGCUgU--UUGaau--CGGCU--UGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 33134 | 0.66 | 0.804114 |
Target: 5'- -gUCGCCGAgGAagucaauGCgcAGCCGGuguACCGg -3' miRNA: 3'- ugAGCGGCUgUU-------UGaaUCGGCU---UGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 26747 | 0.66 | 0.852056 |
Target: 5'- cUUCGUCGAUAGcggccugacguACUcGGgCGAGCCGg -3' miRNA: 3'- uGAGCGGCUGUU-----------UGAaUCgGCUUGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 39786 | 0.69 | 0.686787 |
Target: 5'- cCUCGCaCGGCAAGC---GCCGGACg- -3' miRNA: 3'- uGAGCG-GCUGUUUGaauCGGCUUGgc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 354 | 0.77 | 0.247221 |
Target: 5'- uGCUCGCCGACcauccggguguGCUUGGCCu-GCCGa -3' miRNA: 3'- -UGAGCGGCUGuu---------UGAAUCGGcuUGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 18035 | 0.7 | 0.583995 |
Target: 5'- uCUUGUCGGCGGGCUgcuugggGGCCuuACCGg -3' miRNA: 3'- uGAGCGGCUGUUUGAa------UCGGcuUGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 31022 | 0.66 | 0.852056 |
Target: 5'- gGCUUGCCGGCcgAGGCaaucGCgCGGGCCa -3' miRNA: 3'- -UGAGCGGCUG--UUUGaau-CG-GCUUGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 32705 | 0.66 | 0.852056 |
Target: 5'- uGCUCGCCGcgugcaauCAGGCgauggagGGCUGAcGCCa -3' miRNA: 3'- -UGAGCGGCu-------GUUUGaa-----UCGGCU-UGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 24467 | 0.7 | 0.59538 |
Target: 5'- --aCGCCGACGAccugcuGCUUGGCCuGcGCCa -3' miRNA: 3'- ugaGCGGCUGUU------UGAAUCGG-CuUGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 34197 | 0.69 | 0.675435 |
Target: 5'- cUUCGCCGACGAggGCacGGCCGcGCaCGa -3' miRNA: 3'- uGAGCGGCUGUU--UGaaUCGGCuUG-GC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 1527 | 0.69 | 0.686787 |
Target: 5'- uAUUCGCCGcccaGCAGuucggcCUUgguaaAGCCGAACCGc -3' miRNA: 3'- -UGAGCGGC----UGUUu-----GAA-----UCGGCUUGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 11776 | 0.69 | 0.686787 |
Target: 5'- gAUUUGCCGGCAGAaugguGCCG-ACCa -3' miRNA: 3'- -UGAGCGGCUGUUUgaau-CGGCuUGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 18365 | 0.68 | 0.720455 |
Target: 5'- gUUUGCCGGCGgcgAGgUUGGCCuuGCCGa -3' miRNA: 3'- uGAGCGGCUGU---UUgAAUCGGcuUGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 31506 | 0.68 | 0.731504 |
Target: 5'- uGC-CGCCGGCGuGCU--GCUGGGCCu -3' miRNA: 3'- -UGaGCGGCUGUuUGAauCGGCUUGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 24395 | 0.66 | 0.805108 |
Target: 5'- aACUCGCUGcGCAAguugaagaaGCgcAGCCGGcCCGa -3' miRNA: 3'- -UGAGCGGC-UGUU---------UGaaUCGGCUuGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 18465 | 0.66 | 0.842219 |
Target: 5'- cGCggCGCCGGC-GGCgucGGCCGAuucguccACCGu -3' miRNA: 3'- -UGa-GCGGCUGuUUGaa-UCGGCU-------UGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 26071 | 0.66 | 0.843126 |
Target: 5'- --gCGCuCGGCGAACUcgGGgCGGGCCu -3' miRNA: 3'- ugaGCG-GCUGUUUGAa-UCgGCUUGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 679 | 0.66 | 0.843126 |
Target: 5'- gGC-CGCCuACGgcGGCgccGGCCGGGCCGc -3' miRNA: 3'- -UGaGCGGcUGU--UUGaa-UCGGCUUGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 23759 | 0.66 | 0.843126 |
Target: 5'- --aUGCCGGCGccACcgGGCCGAugCGc -3' miRNA: 3'- ugaGCGGCUGUu-UGaaUCGGCUugGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 37820 | 0.66 | 0.843126 |
Target: 5'- --cCGCCGACAucauc-GCCGAgGCCGa -3' miRNA: 3'- ugaGCGGCUGUuugaauCGGCU-UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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