miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26458 3' -51.8 NC_005357.1 + 36691 1.09 0.001836
Target:  5'- aACUCGCCGACAAACUUAGCCGAACCGu -3'
miRNA:   3'- -UGAGCGGCUGUUUGAAUCGGCUUGGC- -5'
26458 3' -51.8 NC_005357.1 + 30411 0.67 0.795083
Target:  5'- cCUCGCCGGCcacggccgcGCUgcUGGCCGAcguggaaaagGCCa -3'
miRNA:   3'- uGAGCGGCUGuu-------UGA--AUCGGCU----------UGGc -5'
26458 3' -51.8 NC_005357.1 + 33134 0.66 0.804114
Target:  5'- -gUCGCCGAgGAagucaauGCgcAGCCGGuguACCGg -3'
miRNA:   3'- ugAGCGGCUgUU-------UGaaUCGGCU---UGGC- -5'
26458 3' -51.8 NC_005357.1 + 17113 0.66 0.852056
Target:  5'- --cCGgCGACGAGCgccggUGGCaGGGCCGg -3'
miRNA:   3'- ugaGCgGCUGUUUGa----AUCGgCUUGGC- -5'
26458 3' -51.8 NC_005357.1 + 19433 0.71 0.538977
Target:  5'- aGCagGCCGAcCAGGCgaaAGCCGAAuCCGa -3'
miRNA:   3'- -UGagCGGCU-GUUUGaa-UCGGCUU-GGC- -5'
26458 3' -51.8 NC_005357.1 + 32872 0.7 0.583995
Target:  5'- uGCUCGCCaccGGCGAGCagaucgcacUGGCCGAACa- -3'
miRNA:   3'- -UGAGCGG---CUGUUUGa--------AUCGGCUUGgc -5'
26458 3' -51.8 NC_005357.1 + 24029 0.69 0.664038
Target:  5'- cUUCGCCGACG----UGGCCGccACCGg -3'
miRNA:   3'- uGAGCGGCUGUuugaAUCGGCu-UGGC- -5'
26458 3' -51.8 NC_005357.1 + 7711 0.69 0.664038
Target:  5'- gGCUUGCCGAUGAACUgcagcgcacGCuCGGcgGCCGg -3'
miRNA:   3'- -UGAGCGGCUGUUUGAau-------CG-GCU--UGGC- -5'
26458 3' -51.8 NC_005357.1 + 8702 0.68 0.70931
Target:  5'- --gCGCCGcGCAGAUUgcuGCCGAACaCGa -3'
miRNA:   3'- ugaGCGGC-UGUUUGAau-CGGCUUG-GC- -5'
26458 3' -51.8 NC_005357.1 + 16793 0.67 0.795083
Target:  5'- aACUCGCCGAgGugGACgcgcuGCUGGcgACCGc -3'
miRNA:   3'- -UGAGCGGCUgU--UUGaau--CGGCU--UGGC- -5'
26458 3' -51.8 NC_005357.1 + 37795 0.67 0.763954
Target:  5'- uCUUGCCGACccuGCggcAGCgCGGGCCa -3'
miRNA:   3'- uGAGCGGCUGuu-UGaa-UCG-GCUUGGc -5'
26458 3' -51.8 NC_005357.1 + 39786 0.69 0.686787
Target:  5'- cCUCGCaCGGCAAGC---GCCGGACg- -3'
miRNA:   3'- uGAGCG-GCUGUUUGaauCGGCUUGgc -5'
26458 3' -51.8 NC_005357.1 + 354 0.77 0.247221
Target:  5'- uGCUCGCCGACcauccggguguGCUUGGCCu-GCCGa -3'
miRNA:   3'- -UGAGCGGCUGuu---------UGAAUCGGcuUGGC- -5'
26458 3' -51.8 NC_005357.1 + 9885 0.67 0.774494
Target:  5'- gGCaUCGCCGGCGgcAGCauccUGGCCGGcaucACCa -3'
miRNA:   3'- -UG-AGCGGCUGU--UUGa---AUCGGCU----UGGc -5'
26458 3' -51.8 NC_005357.1 + 14917 0.75 0.323077
Target:  5'- gACcgCGCCGAgAAGCUggcGGCCGAggccGCCGg -3'
miRNA:   3'- -UGa-GCGGCUgUUUGAa--UCGGCU----UGGC- -5'
26458 3' -51.8 NC_005357.1 + 21145 0.69 0.674297
Target:  5'- --aCGCCGACc-GCUgGGCCGAcacuuacGCCGa -3'
miRNA:   3'- ugaGCGGCUGuuUGAaUCGGCU-------UGGC- -5'
26458 3' -51.8 NC_005357.1 + 8924 0.67 0.774494
Target:  5'- uCUCGCCaGCGG---UGGCCGuGCCGg -3'
miRNA:   3'- uGAGCGGcUGUUugaAUCGGCuUGGC- -5'
26458 3' -51.8 NC_005357.1 + 24769 0.66 0.804114
Target:  5'- aGCcCGCCGACGccaucaaGAUcgUGGCCGuacuGCCGc -3'
miRNA:   3'- -UGaGCGGCUGU-------UUGa-AUCGGCu---UGGC- -5'
26458 3' -51.8 NC_005357.1 + 18872 0.72 0.484506
Target:  5'- cACcUGCCGGCGAugUcGGCCGAgGCCa -3'
miRNA:   3'- -UGaGCGGCUGUUugAaUCGGCU-UGGc -5'
26458 3' -51.8 NC_005357.1 + 23287 0.7 0.59538
Target:  5'- uCUgGCUGACGGugUgggGGCCGAACa- -3'
miRNA:   3'- uGAgCGGCUGUUugAa--UCGGCUUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.