miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26458 3' -51.8 NC_005357.1 + 36691 1.09 0.001836
Target:  5'- aACUCGCCGACAAACUUAGCCGAACCGu -3'
miRNA:   3'- -UGAGCGGCUGUUUGAAUCGGCUUGGC- -5'
26458 3' -51.8 NC_005357.1 + 354 0.77 0.247221
Target:  5'- uGCUCGCCGACcauccggguguGCUUGGCCu-GCCGa -3'
miRNA:   3'- -UGAGCGGCUGuu---------UGAAUCGGcuUGGC- -5'
26458 3' -51.8 NC_005357.1 + 14917 0.75 0.323077
Target:  5'- gACcgCGCCGAgAAGCUggcGGCCGAggccGCCGg -3'
miRNA:   3'- -UGa-GCGGCUgUUUGAa--UCGGCU----UGGC- -5'
26458 3' -51.8 NC_005357.1 + 37565 0.73 0.422857
Target:  5'- gGCUCGCCGGCGAggauuggaaGC-UGGCCGcuuuCCGu -3'
miRNA:   3'- -UGAGCGGCUGUU---------UGaAUCGGCuu--GGC- -5'
26458 3' -51.8 NC_005357.1 + 8525 0.73 0.439855
Target:  5'- -gUCGCCGGCGAACUUgcccagguaucgcaGGCCGcGCuCGa -3'
miRNA:   3'- ugAGCGGCUGUUUGAA--------------UCGGCuUG-GC- -5'
26458 3' -51.8 NC_005357.1 + 18872 0.72 0.484506
Target:  5'- cACcUGCCGGCGAugUcGGCCGAgGCCa -3'
miRNA:   3'- -UGaGCGGCUGUUugAaUCGGCU-UGGc -5'
26458 3' -51.8 NC_005357.1 + 41704 0.72 0.495201
Target:  5'- --cCGCCaGGCGcucGACUUGGCCGuGGCCGa -3'
miRNA:   3'- ugaGCGG-CUGU---UUGAAUCGGC-UUGGC- -5'
26458 3' -51.8 NC_005357.1 + 19433 0.71 0.538977
Target:  5'- aGCagGCCGAcCAGGCgaaAGCCGAAuCCGa -3'
miRNA:   3'- -UGagCGGCU-GUUUGaa-UCGGCUU-GGC- -5'
26458 3' -51.8 NC_005357.1 + 18000 0.71 0.538977
Target:  5'- -gUCGCCGcCGGACUUGucGuCCGAACCu -3'
miRNA:   3'- ugAGCGGCuGUUUGAAU--C-GGCUUGGc -5'
26458 3' -51.8 NC_005357.1 + 9563 0.71 0.550135
Target:  5'- uGCUCGCCGgugGCGAGCauccGGUCGAACaCGu -3'
miRNA:   3'- -UGAGCGGC---UGUUUGaa--UCGGCUUG-GC- -5'
26458 3' -51.8 NC_005357.1 + 32872 0.7 0.583995
Target:  5'- uGCUCGCCaccGGCGAGCagaucgcacUGGCCGAACa- -3'
miRNA:   3'- -UGAGCGG---CUGUUUGa--------AUCGGCUUGgc -5'
26458 3' -51.8 NC_005357.1 + 18035 0.7 0.583995
Target:  5'- uCUUGUCGGCGGGCUgcuugggGGCCuuACCGg -3'
miRNA:   3'- uGAGCGGCUGUUUGAa------UCGGcuUGGC- -5'
26458 3' -51.8 NC_005357.1 + 23287 0.7 0.59538
Target:  5'- uCUgGCUGACGGugUgggGGCCGAACa- -3'
miRNA:   3'- uGAgCGGCUGUUugAa--UCGGCUUGgc -5'
26458 3' -51.8 NC_005357.1 + 24467 0.7 0.59538
Target:  5'- --aCGCCGACGAccugcuGCUUGGCCuGcGCCa -3'
miRNA:   3'- ugaGCGGCUGUU------UGAAUCGG-CuUGGc -5'
26458 3' -51.8 NC_005357.1 + 26499 0.69 0.641158
Target:  5'- cCUCGCCGACucGCa-AGCCGGcaucauucACCGc -3'
miRNA:   3'- uGAGCGGCUGuuUGaaUCGGCU--------UGGC- -5'
26458 3' -51.8 NC_005357.1 + 28224 0.69 0.652608
Target:  5'- --aCGCCGACGAccacGCgcgGGUCGGACUGc -3'
miRNA:   3'- ugaGCGGCUGUU----UGaa-UCGGCUUGGC- -5'
26458 3' -51.8 NC_005357.1 + 34849 0.69 0.660612
Target:  5'- -gUCGCCGAC-GACUUcguggacguguccaAGCCGGuggcGCCGc -3'
miRNA:   3'- ugAGCGGCUGuUUGAA--------------UCGGCU----UGGC- -5'
26458 3' -51.8 NC_005357.1 + 24029 0.69 0.664038
Target:  5'- cUUCGCCGACG----UGGCCGccACCGg -3'
miRNA:   3'- uGAGCGGCUGUuugaAUCGGCu-UGGC- -5'
26458 3' -51.8 NC_005357.1 + 7711 0.69 0.664038
Target:  5'- gGCUUGCCGAUGAACUgcagcgcacGCuCGGcgGCCGg -3'
miRNA:   3'- -UGAGCGGCUGUUUGAau-------CG-GCU--UGGC- -5'
26458 3' -51.8 NC_005357.1 + 21145 0.69 0.674297
Target:  5'- --aCGCCGACc-GCUgGGCCGAcacuuacGCCGa -3'
miRNA:   3'- ugaGCGGCUGuuUGAaUCGGCU-------UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.