Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26458 | 3' | -51.8 | NC_005357.1 | + | 34197 | 0.69 | 0.675435 |
Target: 5'- cUUCGCCGACGAggGCacGGCCGcGCaCGa -3' miRNA: 3'- uGAGCGGCUGUU--UGaaUCGGCuUG-GC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 1527 | 0.69 | 0.686787 |
Target: 5'- uAUUCGCCGcccaGCAGuucggcCUUgguaaAGCCGAACCGc -3' miRNA: 3'- -UGAGCGGC----UGUUu-----GAA-----UCGGCUUGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 11776 | 0.69 | 0.686787 |
Target: 5'- gAUUUGCCGGCAGAaugguGCCG-ACCa -3' miRNA: 3'- -UGAGCGGCUGUUUgaau-CGGCuUGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 39786 | 0.69 | 0.686787 |
Target: 5'- cCUCGCaCGGCAAGC---GCCGGACg- -3' miRNA: 3'- uGAGCG-GCUGUUUGaauCGGCUUGgc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 31310 | 0.68 | 0.70931 |
Target: 5'- uGCUCGCaCGuuuGAACcaaUUGGCCGcAGCCGa -3' miRNA: 3'- -UGAGCG-GCug-UUUG---AAUCGGC-UUGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 8702 | 0.68 | 0.70931 |
Target: 5'- --gCGCCGcGCAGAUUgcuGCCGAACaCGa -3' miRNA: 3'- ugaGCGGC-UGUUUGAau-CGGCUUG-GC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 18365 | 0.68 | 0.720455 |
Target: 5'- gUUUGCCGGCGgcgAGgUUGGCCuuGCCGa -3' miRNA: 3'- uGAGCGGCUGU---UUgAAUCGGcuUGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 31506 | 0.68 | 0.731504 |
Target: 5'- uGC-CGCCGGCGuGCU--GCUGGGCCu -3' miRNA: 3'- -UGaGCGGCUGUuUGAauCGGCUUGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 17084 | 0.68 | 0.742446 |
Target: 5'- gGCgaaGCCGGCGcgguuCUcGGCCGGGCCu -3' miRNA: 3'- -UGag-CGGCUGUuu---GAaUCGGCUUGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 4822 | 0.67 | 0.753267 |
Target: 5'- uGCUgGCCGGCGAcaggucGCcgUAGUCGAugACCa -3' miRNA: 3'- -UGAgCGGCUGUU------UGa-AUCGGCU--UGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 37795 | 0.67 | 0.763954 |
Target: 5'- uCUUGCCGACccuGCggcAGCgCGGGCCa -3' miRNA: 3'- uGAGCGGCUGuu-UGaa-UCG-GCUUGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 1182 | 0.67 | 0.774494 |
Target: 5'- uCUCGCCGcCGGGgUcGGCCGggUUGu -3' miRNA: 3'- uGAGCGGCuGUUUgAaUCGGCuuGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 9885 | 0.67 | 0.774494 |
Target: 5'- gGCaUCGCCGGCGgcAGCauccUGGCCGGcaucACCa -3' miRNA: 3'- -UG-AGCGGCUGU--UUGa---AUCGGCU----UGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 8924 | 0.67 | 0.774494 |
Target: 5'- uCUCGCCaGCGG---UGGCCGuGCCGg -3' miRNA: 3'- uGAGCGGcUGUUugaAUCGGCuUGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 18578 | 0.67 | 0.795083 |
Target: 5'- cGCUCGCgGugAcGGCcUGGCCGu-CCGa -3' miRNA: 3'- -UGAGCGgCugU-UUGaAUCGGCuuGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 30411 | 0.67 | 0.795083 |
Target: 5'- cCUCGCCGGCcacggccgcGCUgcUGGCCGAcguggaaaagGCCa -3' miRNA: 3'- uGAGCGGCUGuu-------UGA--AUCGGCU----------UGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 16793 | 0.67 | 0.795083 |
Target: 5'- aACUCGCCGAgGugGACgcgcuGCUGGcgACCGc -3' miRNA: 3'- -UGAGCGGCUgU--UUGaau--CGGCU--UGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 37174 | 0.67 | 0.795083 |
Target: 5'- cGCaUUGCCGACcccGACcugccGGCCGAACUGc -3' miRNA: 3'- -UG-AGCGGCUGu--UUGaa---UCGGCUUGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 24769 | 0.66 | 0.804114 |
Target: 5'- aGCcCGCCGACGccaucaaGAUcgUGGCCGuacuGCCGc -3' miRNA: 3'- -UGaGCGGCUGU-------UUGa-AUCGGCu---UGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 33134 | 0.66 | 0.804114 |
Target: 5'- -gUCGCCGAgGAagucaauGCgcAGCCGGuguACCGg -3' miRNA: 3'- ugAGCGGCUgUU-------UGaaUCGGCU---UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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