miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26458 3' -51.8 NC_005357.1 + 8924 0.67 0.774494
Target:  5'- uCUCGCCaGCGG---UGGCCGuGCCGg -3'
miRNA:   3'- uGAGCGGcUGUUugaAUCGGCuUGGC- -5'
26458 3' -51.8 NC_005357.1 + 9885 0.67 0.774494
Target:  5'- gGCaUCGCCGGCGgcAGCauccUGGCCGGcaucACCa -3'
miRNA:   3'- -UG-AGCGGCUGU--UUGa---AUCGGCU----UGGc -5'
26458 3' -51.8 NC_005357.1 + 37795 0.67 0.763954
Target:  5'- uCUUGCCGACccuGCggcAGCgCGGGCCa -3'
miRNA:   3'- uGAGCGGCUGuu-UGaa-UCG-GCUUGGc -5'
26458 3' -51.8 NC_005357.1 + 4822 0.67 0.753267
Target:  5'- uGCUgGCCGGCGAcaggucGCcgUAGUCGAugACCa -3'
miRNA:   3'- -UGAgCGGCUGUU------UGa-AUCGGCU--UGGc -5'
26458 3' -51.8 NC_005357.1 + 17084 0.68 0.742446
Target:  5'- gGCgaaGCCGGCGcgguuCUcGGCCGGGCCu -3'
miRNA:   3'- -UGag-CGGCUGUuu---GAaUCGGCUUGGc -5'
26458 3' -51.8 NC_005357.1 + 31506 0.68 0.731504
Target:  5'- uGC-CGCCGGCGuGCU--GCUGGGCCu -3'
miRNA:   3'- -UGaGCGGCUGUuUGAauCGGCUUGGc -5'
26458 3' -51.8 NC_005357.1 + 18365 0.68 0.720455
Target:  5'- gUUUGCCGGCGgcgAGgUUGGCCuuGCCGa -3'
miRNA:   3'- uGAGCGGCUGU---UUgAAUCGGcuUGGC- -5'
26458 3' -51.8 NC_005357.1 + 31310 0.68 0.70931
Target:  5'- uGCUCGCaCGuuuGAACcaaUUGGCCGcAGCCGa -3'
miRNA:   3'- -UGAGCG-GCug-UUUG---AAUCGGC-UUGGC- -5'
26458 3' -51.8 NC_005357.1 + 8702 0.68 0.70931
Target:  5'- --gCGCCGcGCAGAUUgcuGCCGAACaCGa -3'
miRNA:   3'- ugaGCGGC-UGUUUGAau-CGGCUUG-GC- -5'
26458 3' -51.8 NC_005357.1 + 39786 0.69 0.686787
Target:  5'- cCUCGCaCGGCAAGC---GCCGGACg- -3'
miRNA:   3'- uGAGCG-GCUGUUUGaauCGGCUUGgc -5'
26458 3' -51.8 NC_005357.1 + 1527 0.69 0.686787
Target:  5'- uAUUCGCCGcccaGCAGuucggcCUUgguaaAGCCGAACCGc -3'
miRNA:   3'- -UGAGCGGC----UGUUu-----GAA-----UCGGCUUGGC- -5'
26458 3' -51.8 NC_005357.1 + 11776 0.69 0.686787
Target:  5'- gAUUUGCCGGCAGAaugguGCCG-ACCa -3'
miRNA:   3'- -UGAGCGGCUGUUUgaau-CGGCuUGGc -5'
26458 3' -51.8 NC_005357.1 + 34197 0.69 0.675435
Target:  5'- cUUCGCCGACGAggGCacGGCCGcGCaCGa -3'
miRNA:   3'- uGAGCGGCUGUU--UGaaUCGGCuUG-GC- -5'
26458 3' -51.8 NC_005357.1 + 21145 0.69 0.674297
Target:  5'- --aCGCCGACc-GCUgGGCCGAcacuuacGCCGa -3'
miRNA:   3'- ugaGCGGCUGuuUGAaUCGGCU-------UGGC- -5'
26458 3' -51.8 NC_005357.1 + 7711 0.69 0.664038
Target:  5'- gGCUUGCCGAUGAACUgcagcgcacGCuCGGcgGCCGg -3'
miRNA:   3'- -UGAGCGGCUGUUUGAau-------CG-GCU--UGGC- -5'
26458 3' -51.8 NC_005357.1 + 24029 0.69 0.664038
Target:  5'- cUUCGCCGACG----UGGCCGccACCGg -3'
miRNA:   3'- uGAGCGGCUGUuugaAUCGGCu-UGGC- -5'
26458 3' -51.8 NC_005357.1 + 34849 0.69 0.660612
Target:  5'- -gUCGCCGAC-GACUUcguggacguguccaAGCCGGuggcGCCGc -3'
miRNA:   3'- ugAGCGGCUGuUUGAA--------------UCGGCU----UGGC- -5'
26458 3' -51.8 NC_005357.1 + 28224 0.69 0.652608
Target:  5'- --aCGCCGACGAccacGCgcgGGUCGGACUGc -3'
miRNA:   3'- ugaGCGGCUGUU----UGaa-UCGGCUUGGC- -5'
26458 3' -51.8 NC_005357.1 + 26499 0.69 0.641158
Target:  5'- cCUCGCCGACucGCa-AGCCGGcaucauucACCGc -3'
miRNA:   3'- uGAGCGGCUGuuUGaaUCGGCU--------UGGC- -5'
26458 3' -51.8 NC_005357.1 + 23287 0.7 0.59538
Target:  5'- uCUgGCUGACGGugUgggGGCCGAACa- -3'
miRNA:   3'- uGAgCGGCUGUUugAa--UCGGCUUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.