Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26458 | 3' | -51.8 | NC_005357.1 | + | 18365 | 0.68 | 0.720455 |
Target: 5'- gUUUGCCGGCGgcgAGgUUGGCCuuGCCGa -3' miRNA: 3'- uGAGCGGCUGU---UUgAAUCGGcuUGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 18465 | 0.66 | 0.842219 |
Target: 5'- cGCggCGCCGGC-GGCgucGGCCGAuucguccACCGu -3' miRNA: 3'- -UGa-GCGGCUGuUUGaa-UCGGCU-------UGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 18578 | 0.67 | 0.795083 |
Target: 5'- cGCUCGCgGugAcGGCcUGGCCGu-CCGa -3' miRNA: 3'- -UGAGCGgCugU-UUGaAUCGGCuuGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 18872 | 0.72 | 0.484506 |
Target: 5'- cACcUGCCGGCGAugUcGGCCGAgGCCa -3' miRNA: 3'- -UGaGCGGCUGUUugAaUCGGCU-UGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 19433 | 0.71 | 0.538977 |
Target: 5'- aGCagGCCGAcCAGGCgaaAGCCGAAuCCGa -3' miRNA: 3'- -UGagCGGCU-GUUUGaa-UCGGCUU-GGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 21145 | 0.69 | 0.674297 |
Target: 5'- --aCGCCGACc-GCUgGGCCGAcacuuacGCCGa -3' miRNA: 3'- ugaGCGGCUGuuUGAaUCGGCU-------UGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 23287 | 0.7 | 0.59538 |
Target: 5'- uCUgGCUGACGGugUgggGGCCGAACa- -3' miRNA: 3'- uGAgCGGCUGUUugAa--UCGGCUUGgc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 23759 | 0.66 | 0.843126 |
Target: 5'- --aUGCCGGCGccACcgGGCCGAugCGc -3' miRNA: 3'- ugaGCGGCUGUu-UGaaUCGGCUugGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 24029 | 0.69 | 0.664038 |
Target: 5'- cUUCGCCGACG----UGGCCGccACCGg -3' miRNA: 3'- uGAGCGGCUGUuugaAUCGGCu-UGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 24395 | 0.66 | 0.805108 |
Target: 5'- aACUCGCUGcGCAAguugaagaaGCgcAGCCGGcCCGa -3' miRNA: 3'- -UGAGCGGC-UGUU---------UGaaUCGGCUuGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 24467 | 0.7 | 0.59538 |
Target: 5'- --aCGCCGACGAccugcuGCUUGGCCuGcGCCa -3' miRNA: 3'- ugaGCGGCUGUU------UGAAUCGG-CuUGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 24769 | 0.66 | 0.804114 |
Target: 5'- aGCcCGCCGACGccaucaaGAUcgUGGCCGuacuGCCGc -3' miRNA: 3'- -UGaGCGGCUGU-------UUGa-AUCGGCu---UGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 26071 | 0.66 | 0.843126 |
Target: 5'- --gCGCuCGGCGAACUcgGGgCGGGCCu -3' miRNA: 3'- ugaGCG-GCUGUUUGAa-UCgGCUUGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 26499 | 0.69 | 0.641158 |
Target: 5'- cCUCGCCGACucGCa-AGCCGGcaucauucACCGc -3' miRNA: 3'- uGAGCGGCUGuuUGaaUCGGCU--------UGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 26747 | 0.66 | 0.852056 |
Target: 5'- cUUCGUCGAUAGcggccugacguACUcGGgCGAGCCGg -3' miRNA: 3'- uGAGCGGCUGUU-----------UGAaUCgGCUUGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 27538 | 0.66 | 0.814935 |
Target: 5'- -aUCGCCGcGCAGACccugaaAGCCGGGCa- -3' miRNA: 3'- ugAGCGGC-UGUUUGaa----UCGGCUUGgc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 28224 | 0.69 | 0.652608 |
Target: 5'- --aCGCCGACGAccacGCgcgGGUCGGACUGc -3' miRNA: 3'- ugaGCGGCUGUU----UGaa-UCGGCUUGGC- -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 30411 | 0.67 | 0.795083 |
Target: 5'- cCUCGCCGGCcacggccgcGCUgcUGGCCGAcguggaaaagGCCa -3' miRNA: 3'- uGAGCGGCUGuu-------UGA--AUCGGCU----------UGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 31022 | 0.66 | 0.852056 |
Target: 5'- gGCUUGCCGGCcgAGGCaaucGCgCGGGCCa -3' miRNA: 3'- -UGAGCGGCUG--UUUGaau-CG-GCUUGGc -5' |
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26458 | 3' | -51.8 | NC_005357.1 | + | 31310 | 0.68 | 0.70931 |
Target: 5'- uGCUCGCaCGuuuGAACcaaUUGGCCGcAGCCGa -3' miRNA: 3'- -UGAGCG-GCug-UUUG---AAUCGGC-UUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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