miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26458 3' -51.8 NC_005357.1 + 26071 0.66 0.843126
Target:  5'- --gCGCuCGGCGAACUcgGGgCGGGCCu -3'
miRNA:   3'- ugaGCG-GCUGUUUGAa-UCgGCUUGGc -5'
26458 3' -51.8 NC_005357.1 + 24769 0.66 0.804114
Target:  5'- aGCcCGCCGACGccaucaaGAUcgUGGCCGuacuGCCGc -3'
miRNA:   3'- -UGaGCGGCUGU-------UUGa-AUCGGCu---UGGC- -5'
26458 3' -51.8 NC_005357.1 + 24467 0.7 0.59538
Target:  5'- --aCGCCGACGAccugcuGCUUGGCCuGcGCCa -3'
miRNA:   3'- ugaGCGGCUGUU------UGAAUCGG-CuUGGc -5'
26458 3' -51.8 NC_005357.1 + 24395 0.66 0.805108
Target:  5'- aACUCGCUGcGCAAguugaagaaGCgcAGCCGGcCCGa -3'
miRNA:   3'- -UGAGCGGC-UGUU---------UGaaUCGGCUuGGC- -5'
26458 3' -51.8 NC_005357.1 + 24029 0.69 0.664038
Target:  5'- cUUCGCCGACG----UGGCCGccACCGg -3'
miRNA:   3'- uGAGCGGCUGUuugaAUCGGCu-UGGC- -5'
26458 3' -51.8 NC_005357.1 + 23759 0.66 0.843126
Target:  5'- --aUGCCGGCGccACcgGGCCGAugCGc -3'
miRNA:   3'- ugaGCGGCUGUu-UGaaUCGGCUugGC- -5'
26458 3' -51.8 NC_005357.1 + 23287 0.7 0.59538
Target:  5'- uCUgGCUGACGGugUgggGGCCGAACa- -3'
miRNA:   3'- uGAgCGGCUGUUugAa--UCGGCUUGgc -5'
26458 3' -51.8 NC_005357.1 + 21145 0.69 0.674297
Target:  5'- --aCGCCGACc-GCUgGGCCGAcacuuacGCCGa -3'
miRNA:   3'- ugaGCGGCUGuuUGAaUCGGCU-------UGGC- -5'
26458 3' -51.8 NC_005357.1 + 19433 0.71 0.538977
Target:  5'- aGCagGCCGAcCAGGCgaaAGCCGAAuCCGa -3'
miRNA:   3'- -UGagCGGCU-GUUUGaa-UCGGCUU-GGC- -5'
26458 3' -51.8 NC_005357.1 + 18872 0.72 0.484506
Target:  5'- cACcUGCCGGCGAugUcGGCCGAgGCCa -3'
miRNA:   3'- -UGaGCGGCUGUUugAaUCGGCU-UGGc -5'
26458 3' -51.8 NC_005357.1 + 18578 0.67 0.795083
Target:  5'- cGCUCGCgGugAcGGCcUGGCCGu-CCGa -3'
miRNA:   3'- -UGAGCGgCugU-UUGaAUCGGCuuGGC- -5'
26458 3' -51.8 NC_005357.1 + 18465 0.66 0.842219
Target:  5'- cGCggCGCCGGC-GGCgucGGCCGAuucguccACCGu -3'
miRNA:   3'- -UGa-GCGGCUGuUUGaa-UCGGCU-------UGGC- -5'
26458 3' -51.8 NC_005357.1 + 18365 0.68 0.720455
Target:  5'- gUUUGCCGGCGgcgAGgUUGGCCuuGCCGa -3'
miRNA:   3'- uGAGCGGCUGU---UUgAAUCGGcuUGGC- -5'
26458 3' -51.8 NC_005357.1 + 18035 0.7 0.583995
Target:  5'- uCUUGUCGGCGGGCUgcuugggGGCCuuACCGg -3'
miRNA:   3'- uGAGCGGCUGUUUGAa------UCGGcuUGGC- -5'
26458 3' -51.8 NC_005357.1 + 18000 0.71 0.538977
Target:  5'- -gUCGCCGcCGGACUUGucGuCCGAACCu -3'
miRNA:   3'- ugAGCGGCuGUUUGAAU--C-GGCUUGGc -5'
26458 3' -51.8 NC_005357.1 + 17113 0.66 0.852056
Target:  5'- --cCGgCGACGAGCgccggUGGCaGGGCCGg -3'
miRNA:   3'- ugaGCgGCUGUUUGa----AUCGgCUUGGC- -5'
26458 3' -51.8 NC_005357.1 + 17084 0.68 0.742446
Target:  5'- gGCgaaGCCGGCGcgguuCUcGGCCGGGCCu -3'
miRNA:   3'- -UGag-CGGCUGUuu---GAaUCGGCUUGGc -5'
26458 3' -51.8 NC_005357.1 + 16793 0.67 0.795083
Target:  5'- aACUCGCCGAgGugGACgcgcuGCUGGcgACCGc -3'
miRNA:   3'- -UGAGCGGCUgU--UUGaau--CGGCU--UGGC- -5'
26458 3' -51.8 NC_005357.1 + 14917 0.75 0.323077
Target:  5'- gACcgCGCCGAgAAGCUggcGGCCGAggccGCCGg -3'
miRNA:   3'- -UGa-GCGGCUgUUUGAa--UCGGCU----UGGC- -5'
26458 3' -51.8 NC_005357.1 + 11776 0.69 0.686787
Target:  5'- gAUUUGCCGGCAGAaugguGCCG-ACCa -3'
miRNA:   3'- -UGAGCGGCUGUUUgaau-CGGCuUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.