miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26458 3' -51.8 NC_005357.1 + 41704 0.72 0.495201
Target:  5'- --cCGCCaGGCGcucGACUUGGCCGuGGCCGa -3'
miRNA:   3'- ugaGCGG-CUGU---UUGAAUCGGC-UUGGC- -5'
26458 3' -51.8 NC_005357.1 + 39786 0.69 0.686787
Target:  5'- cCUCGCaCGGCAAGC---GCCGGACg- -3'
miRNA:   3'- uGAGCG-GCUGUUUGaauCGGCUUGgc -5'
26458 3' -51.8 NC_005357.1 + 37820 0.66 0.843126
Target:  5'- --cCGCCGACAucauc-GCCGAgGCCGa -3'
miRNA:   3'- ugaGCGGCUGUuugaauCGGCU-UGGC- -5'
26458 3' -51.8 NC_005357.1 + 37795 0.67 0.763954
Target:  5'- uCUUGCCGACccuGCggcAGCgCGGGCCa -3'
miRNA:   3'- uGAGCGGCUGuu-UGaa-UCG-GCUUGGc -5'
26458 3' -51.8 NC_005357.1 + 37565 0.73 0.422857
Target:  5'- gGCUCGCCGGCGAggauuggaaGC-UGGCCGcuuuCCGu -3'
miRNA:   3'- -UGAGCGGCUGUU---------UGaAUCGGCuu--GGC- -5'
26458 3' -51.8 NC_005357.1 + 37174 0.67 0.795083
Target:  5'- cGCaUUGCCGACcccGACcugccGGCCGAACUGc -3'
miRNA:   3'- -UG-AGCGGCUGu--UUGaa---UCGGCUUGGC- -5'
26458 3' -51.8 NC_005357.1 + 36691 1.09 0.001836
Target:  5'- aACUCGCCGACAAACUUAGCCGAACCGu -3'
miRNA:   3'- -UGAGCGGCUGUUUGAAUCGGCUUGGC- -5'
26458 3' -51.8 NC_005357.1 + 34849 0.69 0.660612
Target:  5'- -gUCGCCGAC-GACUUcguggacguguccaAGCCGGuggcGCCGc -3'
miRNA:   3'- ugAGCGGCUGuUUGAA--------------UCGGCU----UGGC- -5'
26458 3' -51.8 NC_005357.1 + 34197 0.69 0.675435
Target:  5'- cUUCGCCGACGAggGCacGGCCGcGCaCGa -3'
miRNA:   3'- uGAGCGGCUGUU--UGaaUCGGCuUG-GC- -5'
26458 3' -51.8 NC_005357.1 + 33134 0.66 0.804114
Target:  5'- -gUCGCCGAgGAagucaauGCgcAGCCGGuguACCGg -3'
miRNA:   3'- ugAGCGGCUgUU-------UGaaUCGGCU---UGGC- -5'
26458 3' -51.8 NC_005357.1 + 32872 0.7 0.583995
Target:  5'- uGCUCGCCaccGGCGAGCagaucgcacUGGCCGAACa- -3'
miRNA:   3'- -UGAGCGG---CUGUUUGa--------AUCGGCUUGgc -5'
26458 3' -51.8 NC_005357.1 + 32705 0.66 0.852056
Target:  5'- uGCUCGCCGcgugcaauCAGGCgauggagGGCUGAcGCCa -3'
miRNA:   3'- -UGAGCGGCu-------GUUUGaa-----UCGGCU-UGGc -5'
26458 3' -51.8 NC_005357.1 + 31506 0.68 0.731504
Target:  5'- uGC-CGCCGGCGuGCU--GCUGGGCCu -3'
miRNA:   3'- -UGaGCGGCUGUuUGAauCGGCUUGGc -5'
26458 3' -51.8 NC_005357.1 + 31310 0.68 0.70931
Target:  5'- uGCUCGCaCGuuuGAACcaaUUGGCCGcAGCCGa -3'
miRNA:   3'- -UGAGCG-GCug-UUUG---AAUCGGC-UUGGC- -5'
26458 3' -51.8 NC_005357.1 + 31022 0.66 0.852056
Target:  5'- gGCUUGCCGGCcgAGGCaaucGCgCGGGCCa -3'
miRNA:   3'- -UGAGCGGCUG--UUUGaau-CG-GCUUGGc -5'
26458 3' -51.8 NC_005357.1 + 30411 0.67 0.795083
Target:  5'- cCUCGCCGGCcacggccgcGCUgcUGGCCGAcguggaaaagGCCa -3'
miRNA:   3'- uGAGCGGCUGuu-------UGA--AUCGGCU----------UGGc -5'
26458 3' -51.8 NC_005357.1 + 28224 0.69 0.652608
Target:  5'- --aCGCCGACGAccacGCgcgGGUCGGACUGc -3'
miRNA:   3'- ugaGCGGCUGUU----UGaa-UCGGCUUGGC- -5'
26458 3' -51.8 NC_005357.1 + 27538 0.66 0.814935
Target:  5'- -aUCGCCGcGCAGACccugaaAGCCGGGCa- -3'
miRNA:   3'- ugAGCGGC-UGUUUGaa----UCGGCUUGgc -5'
26458 3' -51.8 NC_005357.1 + 26747 0.66 0.852056
Target:  5'- cUUCGUCGAUAGcggccugacguACUcGGgCGAGCCGg -3'
miRNA:   3'- uGAGCGGCUGUU-----------UGAaUCgGCUUGGC- -5'
26458 3' -51.8 NC_005357.1 + 26499 0.69 0.641158
Target:  5'- cCUCGCCGACucGCa-AGCCGGcaucauucACCGc -3'
miRNA:   3'- uGAGCGGCUGuuUGaaUCGGCU--------UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.