miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26459 5' -54.2 NC_005357.1 + 19824 0.66 0.655306
Target:  5'- cGCGCGCGGggCGcuucuucgugcaagAUCGCaACCGcgGCg -3'
miRNA:   3'- uCGCGCGUCuaGU--------------UGGCG-UGGCaaUG- -5'
26459 5' -54.2 NC_005357.1 + 13972 0.67 0.635967
Target:  5'- aAGCGCGUAGGUCuuguACuCGCugGCCucgUGCu -3'
miRNA:   3'- -UCGCGCGUCUAGu---UG-GCG--UGGca-AUG- -5'
26459 5' -54.2 NC_005357.1 + 28123 0.67 0.635967
Target:  5'- cGCGCGcCAGuUCAgcaacgacguggGCCGCAUCGccgACa -3'
miRNA:   3'- uCGCGC-GUCuAGU------------UGGCGUGGCaa-UG- -5'
26459 5' -54.2 NC_005357.1 + 19858 0.67 0.635967
Target:  5'- cAGCGUGguGAguUCGGgCGUGCCGaagGCg -3'
miRNA:   3'- -UCGCGCguCU--AGUUgGCGUGGCaa-UG- -5'
26459 5' -54.2 NC_005357.1 + 25801 0.67 0.635967
Target:  5'- cGGCGCGCucGGuAUCGuugauCUGCACCGg--- -3'
miRNA:   3'- -UCGCGCG--UC-UAGUu----GGCGUGGCaaug -5'
26459 5' -54.2 NC_005357.1 + 7973 0.67 0.635967
Target:  5'- cGGCGCGCA--UCGgguuuccaugucGCCGCGCuCGuUUGCc -3'
miRNA:   3'- -UCGCGCGUcuAGU------------UGGCGUG-GC-AAUG- -5'
26459 5' -54.2 NC_005357.1 + 27419 0.67 0.601845
Target:  5'- cGCGCGCcuGGcgC-ACCGCGCCcg-GCg -3'
miRNA:   3'- uCGCGCG--UCuaGuUGGCGUGGcaaUG- -5'
26459 5' -54.2 NC_005357.1 + 6175 0.67 0.613205
Target:  5'- cAGCGCagGCcGGUCuuGCCGCAgCGuUUGCa -3'
miRNA:   3'- -UCGCG--CGuCUAGu-UGGCGUgGC-AAUG- -5'
26459 5' -54.2 NC_005357.1 + 21881 0.67 0.624582
Target:  5'- cAGCaaGCGGGggcGCCGCAUCGUgugGCg -3'
miRNA:   3'- -UCGcgCGUCUaguUGGCGUGGCAa--UG- -5'
26459 5' -54.2 NC_005357.1 + 32431 0.68 0.545651
Target:  5'- gGGCGCGCGGcacuuUCGACCcCGCCa---- -3'
miRNA:   3'- -UCGCGCGUCu----AGUUGGcGUGGcaaug -5'
26459 5' -54.2 NC_005357.1 + 31612 0.68 0.534596
Target:  5'- gAGC-CGgaaGGAuUCAGCCGCGCCGagGCg -3'
miRNA:   3'- -UCGcGCg--UCU-AGUUGGCGUGGCaaUG- -5'
26459 5' -54.2 NC_005357.1 + 23655 0.68 0.534596
Target:  5'- cGGCGgGCAG--CAACUGCACCag-GCg -3'
miRNA:   3'- -UCGCgCGUCuaGUUGGCGUGGcaaUG- -5'
26459 5' -54.2 NC_005357.1 + 14125 0.68 0.534596
Target:  5'- gAGCGCGCcGAguucuUCAAguuCUGCGCCGUg-- -3'
miRNA:   3'- -UCGCGCGuCU-----AGUU---GGCGUGGCAaug -5'
26459 5' -54.2 NC_005357.1 + 34792 0.68 0.534596
Target:  5'- gAGCcgGCGUGGGUCgAGCCGCGCCc---- -3'
miRNA:   3'- -UCG--CGCGUCUAG-UUGGCGUGGcaaug -5'
26459 5' -54.2 NC_005357.1 + 23417 0.68 0.544542
Target:  5'- gAGCGCGCcGGUCAgugcgacGCCG-GCCGggaUGCg -3'
miRNA:   3'- -UCGCGCGuCUAGU-------UGGCgUGGCa--AUG- -5'
26459 5' -54.2 NC_005357.1 + 11177 0.68 0.545651
Target:  5'- cGUGCGCuGGUCGGCCGUGgUGauggUGCg -3'
miRNA:   3'- uCGCGCGuCUAGUUGGCGUgGCa---AUG- -5'
26459 5' -54.2 NC_005357.1 + 34883 0.68 0.567971
Target:  5'- uGGCGcCGCGGAUCgAGCaCGcCGCCGa--- -3'
miRNA:   3'- -UCGC-GCGUCUAG-UUG-GC-GUGGCaaug -5'
26459 5' -54.2 NC_005357.1 + 37476 0.68 0.556779
Target:  5'- cAGCGCGauacgCGGCUGCAUCGUgGCg -3'
miRNA:   3'- -UCGCGCgucuaGUUGGCGUGGCAaUG- -5'
26459 5' -54.2 NC_005357.1 + 27796 0.68 0.556779
Target:  5'- cGCGCGCcGcgCAGCCGCAgcaCGUc-- -3'
miRNA:   3'- uCGCGCGuCuaGUUGGCGUg--GCAaug -5'
26459 5' -54.2 NC_005357.1 + 20618 0.68 0.556779
Target:  5'- cGGCGuCGCAGGUCGgugucgGCCuGCGCuCGUUc- -3'
miRNA:   3'- -UCGC-GCGUCUAGU------UGG-CGUG-GCAAug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.