miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26459 5' -54.2 NC_005357.1 + 10998 0.66 0.647348
Target:  5'- cGC-CGCAGAUCGuggCGuCGCCGUUGa -3'
miRNA:   3'- uCGcGCGUCUAGUug-GC-GUGGCAAUg -5'
26459 5' -54.2 NC_005357.1 + 11177 0.68 0.545651
Target:  5'- cGUGCGCuGGUCGGCCGUGgUGauggUGCg -3'
miRNA:   3'- uCGCGCGuCUAGUUGGCGUgGCa---AUG- -5'
26459 5' -54.2 NC_005357.1 + 11431 0.69 0.48066
Target:  5'- cGGCGUGCAGGUCG-CCGauaaggcgcgaCACCGgcaGCu -3'
miRNA:   3'- -UCGCGCGUCUAGUuGGC-----------GUGGCaa-UG- -5'
26459 5' -54.2 NC_005357.1 + 11442 0.66 0.703795
Target:  5'- cGCGCgugaGCAGAUCGuccACCGUcacGCCGa--- -3'
miRNA:   3'- uCGCG----CGUCUAGU---UGGCG---UGGCaaug -5'
26459 5' -54.2 NC_005357.1 + 13391 0.79 0.126438
Target:  5'- cAGCGCGCGGuuguaGGCgGCAUCGUUGCg -3'
miRNA:   3'- -UCGCGCGUCuag--UUGgCGUGGCAAUG- -5'
26459 5' -54.2 NC_005357.1 + 13671 0.66 0.647348
Target:  5'- uGCGCGCcGAgaagCGcACCGCGCUGg--- -3'
miRNA:   3'- uCGCGCGuCUa---GU-UGGCGUGGCaaug -5'
26459 5' -54.2 NC_005357.1 + 13797 0.69 0.470187
Target:  5'- uGCGCGCGGAacuggccggccUCAuCCGCGCCc---- -3'
miRNA:   3'- uCGCGCGUCU-----------AGUuGGCGUGGcaaug -5'
26459 5' -54.2 NC_005357.1 + 13972 0.67 0.635967
Target:  5'- aAGCGCGUAGGUCuuguACuCGCugGCCucgUGCu -3'
miRNA:   3'- -UCGCGCGUCUAGu---UG-GCG--UGGca-AUG- -5'
26459 5' -54.2 NC_005357.1 + 14125 0.68 0.534596
Target:  5'- gAGCGCGCcGAguucuUCAAguuCUGCGCCGUg-- -3'
miRNA:   3'- -UCGCGCGuCU-----AGUU---GGCGUGGCAaug -5'
26459 5' -54.2 NC_005357.1 + 14642 0.69 0.523621
Target:  5'- cGGUGCGCAGAUUGAUaccuUGCACCuugGCc -3'
miRNA:   3'- -UCGCGCGUCUAGUUG----GCGUGGcaaUG- -5'
26459 5' -54.2 NC_005357.1 + 15303 0.7 0.43949
Target:  5'- uGCGCGCGGcGUCAGCUuugcaggcuaagGCACUGgUACu -3'
miRNA:   3'- uCGCGCGUC-UAGUUGG------------CGUGGCaAUG- -5'
26459 5' -54.2 NC_005357.1 + 15588 0.7 0.43949
Target:  5'- cGCGCuGCGGAUgcACCGCGCCa---- -3'
miRNA:   3'- uCGCG-CGUCUAguUGGCGUGGcaaug -5'
26459 5' -54.2 NC_005357.1 + 16618 0.68 0.545651
Target:  5'- cGGCccgGUGCAGAUCAACgauaccgagCGCGCCGcgcGCa -3'
miRNA:   3'- -UCG---CGCGUCUAGUUG---------GCGUGGCaa-UG- -5'
26459 5' -54.2 NC_005357.1 + 16809 0.69 0.491246
Target:  5'- cGCGCuGCuGG-CGACCGCGCCGc--- -3'
miRNA:   3'- uCGCG-CGuCUaGUUGGCGUGGCaaug -5'
26459 5' -54.2 NC_005357.1 + 17804 0.66 0.703795
Target:  5'- cGCGCGCAGuauUCcGCCuGCACgGa--- -3'
miRNA:   3'- uCGCGCGUCu--AGuUGG-CGUGgCaaug -5'
26459 5' -54.2 NC_005357.1 + 18269 0.66 0.681355
Target:  5'- aAGCGCGCAGccGUCGaggcGCUGgGCCaGgcGCg -3'
miRNA:   3'- -UCGCGCGUC--UAGU----UGGCgUGG-CaaUG- -5'
26459 5' -54.2 NC_005357.1 + 18467 0.66 0.680227
Target:  5'- cGGCGCcgGCGGcGUCGGCCGauucgucCACCGUgaugACc -3'
miRNA:   3'- -UCGCG--CGUC-UAGUUGGC-------GUGGCAa---UG- -5'
26459 5' -54.2 NC_005357.1 + 19824 0.66 0.655306
Target:  5'- cGCGCGCGGggCGcuucuucgugcaagAUCGCaACCGcgGCg -3'
miRNA:   3'- uCGCGCGUCuaGU--------------UGGCG-UGGCaaUG- -5'
26459 5' -54.2 NC_005357.1 + 19858 0.67 0.635967
Target:  5'- cAGCGUGguGAguUCGGgCGUGCCGaagGCg -3'
miRNA:   3'- -UCGCGCguCU--AGUUgGCGUGGCaa-UG- -5'
26459 5' -54.2 NC_005357.1 + 20618 0.68 0.556779
Target:  5'- cGGCGuCGCAGGUCGgugucgGCCuGCGCuCGUUc- -3'
miRNA:   3'- -UCGC-GCGUCUAGU------UGG-CGUG-GCAAug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.