Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26459 | 5' | -54.2 | NC_005357.1 | + | 28202 | 0.66 | 0.692606 |
Target: 5'- cGGCGCcuugucCAGGUCGGCCaCGCCGa--- -3' miRNA: 3'- -UCGCGc-----GUCUAGUUGGcGUGGCaaug -5' |
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26459 | 5' | -54.2 | NC_005357.1 | + | 28188 | 0.71 | 0.409969 |
Target: 5'- uGCGCGUGGAcgacgcacUUAACCGCGCCa---- -3' miRNA: 3'- uCGCGCGUCU--------AGUUGGCGUGGcaaug -5' |
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26459 | 5' | -54.2 | NC_005357.1 | + | 28159 | 0.74 | 0.260842 |
Target: 5'- cGGUG-GuCAGAUCGACCaCGCCGUUGCc -3' miRNA: 3'- -UCGCgC-GUCUAGUUGGcGUGGCAAUG- -5' |
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26459 | 5' | -54.2 | NC_005357.1 | + | 28123 | 0.67 | 0.635967 |
Target: 5'- cGCGCGcCAGuUCAgcaacgacguggGCCGCAUCGccgACa -3' miRNA: 3'- uCGCGC-GUCuAGU------------UGGCGUGGCaa-UG- -5' |
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26459 | 5' | -54.2 | NC_005357.1 | + | 28076 | 0.69 | 0.512733 |
Target: 5'- cAGCGgGCAGGU-GGCCGCGgCGUc-- -3' miRNA: 3'- -UCGCgCGUCUAgUUGGCGUgGCAaug -5' |
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26459 | 5' | -54.2 | NC_005357.1 | + | 27824 | 0.71 | 0.381713 |
Target: 5'- cGCGCGCGcugcccgcGGUggcgcCGGCCGCGCCGcUGCu -3' miRNA: 3'- uCGCGCGU--------CUA-----GUUGGCGUGGCaAUG- -5' |
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26459 | 5' | -54.2 | NC_005357.1 | + | 27796 | 0.68 | 0.556779 |
Target: 5'- cGCGCGCcGcgCAGCCGCAgcaCGUc-- -3' miRNA: 3'- uCGCGCGuCuaGUUGGCGUg--GCAaug -5' |
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26459 | 5' | -54.2 | NC_005357.1 | + | 27419 | 0.67 | 0.601845 |
Target: 5'- cGCGCGCcuGGcgC-ACCGCGCCcg-GCg -3' miRNA: 3'- uCGCGCG--UCuaGuUGGCGUGGcaaUG- -5' |
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26459 | 5' | -54.2 | NC_005357.1 | + | 25801 | 0.67 | 0.635967 |
Target: 5'- cGGCGCGCucGGuAUCGuugauCUGCACCGg--- -3' miRNA: 3'- -UCGCGCG--UC-UAGUu----GGCGUGGCaaug -5' |
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26459 | 5' | -54.2 | NC_005357.1 | + | 25088 | 0.66 | 0.692606 |
Target: 5'- --aGCGCAGcgCGcCCGgCGCCGUgggaUACa -3' miRNA: 3'- ucgCGCGUCuaGUuGGC-GUGGCA----AUG- -5' |
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26459 | 5' | -54.2 | NC_005357.1 | + | 23742 | 0.69 | 0.469146 |
Target: 5'- uGGCGCGCAGcagCGccaugccggcgccACCGgGCCGaUGCg -3' miRNA: 3'- -UCGCGCGUCua-GU-------------UGGCgUGGCaAUG- -5' |
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26459 | 5' | -54.2 | NC_005357.1 | + | 23655 | 0.68 | 0.534596 |
Target: 5'- cGGCGgGCAG--CAACUGCACCag-GCg -3' miRNA: 3'- -UCGCgCGUCuaGUUGGCGUGGcaaUG- -5' |
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26459 | 5' | -54.2 | NC_005357.1 | + | 23417 | 0.68 | 0.544542 |
Target: 5'- gAGCGCGCcGGUCAgugcgacGCCG-GCCGggaUGCg -3' miRNA: 3'- -UCGCGCGuCUAGU-------UGGCgUGGCa--AUG- -5' |
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26459 | 5' | -54.2 | NC_005357.1 | + | 22982 | 0.72 | 0.329225 |
Target: 5'- uGGCGUGCAGccCGAgaagucCCGCACCG-UGCa -3' miRNA: 3'- -UCGCGCGUCuaGUU------GGCGUGGCaAUG- -5' |
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26459 | 5' | -54.2 | NC_005357.1 | + | 22081 | 0.69 | 0.511649 |
Target: 5'- cGGCGCGCGGcUCGAUgGCgugaaugACCGUaACc -3' miRNA: 3'- -UCGCGCGUCuAGUUGgCG-------UGGCAaUG- -5' |
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26459 | 5' | -54.2 | NC_005357.1 | + | 21962 | 0.73 | 0.27497 |
Target: 5'- cAGUGCGCGGAaCGACCGauaGCCGg--- -3' miRNA: 3'- -UCGCGCGUCUaGUUGGCg--UGGCaaug -5' |
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26459 | 5' | -54.2 | NC_005357.1 | + | 21881 | 0.67 | 0.624582 |
Target: 5'- cAGCaaGCGGGggcGCCGCAUCGUgugGCg -3' miRNA: 3'- -UCGcgCGUCUaguUGGCGUGGCAa--UG- -5' |
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26459 | 5' | -54.2 | NC_005357.1 | + | 21256 | 0.75 | 0.234366 |
Target: 5'- aGGcCGCGCAGca-GGCCGCGCUGUUGa -3' miRNA: 3'- -UC-GCGCGUCuagUUGGCGUGGCAAUg -5' |
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26459 | 5' | -54.2 | NC_005357.1 | + | 20618 | 0.68 | 0.556779 |
Target: 5'- cGGCGuCGCAGGUCGgugucgGCCuGCGCuCGUUc- -3' miRNA: 3'- -UCGC-GCGUCUAGU------UGG-CGUG-GCAAug -5' |
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26459 | 5' | -54.2 | NC_005357.1 | + | 19858 | 0.67 | 0.635967 |
Target: 5'- cAGCGUGguGAguUCGGgCGUGCCGaagGCg -3' miRNA: 3'- -UCGCGCguCU--AGUUgGCGUGGCaa-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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