miRNA display CGI


Results 41 - 60 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26459 5' -54.2 NC_005357.1 + 21256 0.75 0.234366
Target:  5'- aGGcCGCGCAGca-GGCCGCGCUGUUGa -3'
miRNA:   3'- -UC-GCGCGUCuagUUGGCGUGGCAAUg -5'
26459 5' -54.2 NC_005357.1 + 21881 0.67 0.624582
Target:  5'- cAGCaaGCGGGggcGCCGCAUCGUgugGCg -3'
miRNA:   3'- -UCGcgCGUCUaguUGGCGUGGCAa--UG- -5'
26459 5' -54.2 NC_005357.1 + 21962 0.73 0.27497
Target:  5'- cAGUGCGCGGAaCGACCGauaGCCGg--- -3'
miRNA:   3'- -UCGCGCGUCUaGUUGGCg--UGGCaaug -5'
26459 5' -54.2 NC_005357.1 + 22081 0.69 0.511649
Target:  5'- cGGCGCGCGGcUCGAUgGCgugaaugACCGUaACc -3'
miRNA:   3'- -UCGCGCGUCuAGUUGgCG-------UGGCAaUG- -5'
26459 5' -54.2 NC_005357.1 + 22982 0.72 0.329225
Target:  5'- uGGCGUGCAGccCGAgaagucCCGCACCG-UGCa -3'
miRNA:   3'- -UCGCGCGUCuaGUU------GGCGUGGCaAUG- -5'
26459 5' -54.2 NC_005357.1 + 23417 0.68 0.544542
Target:  5'- gAGCGCGCcGGUCAgugcgacGCCG-GCCGggaUGCg -3'
miRNA:   3'- -UCGCGCGuCUAGU-------UGGCgUGGCa--AUG- -5'
26459 5' -54.2 NC_005357.1 + 23655 0.68 0.534596
Target:  5'- cGGCGgGCAG--CAACUGCACCag-GCg -3'
miRNA:   3'- -UCGCgCGUCuaGUUGGCGUGGcaaUG- -5'
26459 5' -54.2 NC_005357.1 + 23742 0.69 0.469146
Target:  5'- uGGCGCGCAGcagCGccaugccggcgccACCGgGCCGaUGCg -3'
miRNA:   3'- -UCGCGCGUCua-GU-------------UGGCgUGGCaAUG- -5'
26459 5' -54.2 NC_005357.1 + 25088 0.66 0.692606
Target:  5'- --aGCGCAGcgCGcCCGgCGCCGUgggaUACa -3'
miRNA:   3'- ucgCGCGUCuaGUuGGC-GUGGCA----AUG- -5'
26459 5' -54.2 NC_005357.1 + 25801 0.67 0.635967
Target:  5'- cGGCGCGCucGGuAUCGuugauCUGCACCGg--- -3'
miRNA:   3'- -UCGCGCG--UC-UAGUu----GGCGUGGCaaug -5'
26459 5' -54.2 NC_005357.1 + 27419 0.67 0.601845
Target:  5'- cGCGCGCcuGGcgC-ACCGCGCCcg-GCg -3'
miRNA:   3'- uCGCGCG--UCuaGuUGGCGUGGcaaUG- -5'
26459 5' -54.2 NC_005357.1 + 27796 0.68 0.556779
Target:  5'- cGCGCGCcGcgCAGCCGCAgcaCGUc-- -3'
miRNA:   3'- uCGCGCGuCuaGUUGGCGUg--GCAaug -5'
26459 5' -54.2 NC_005357.1 + 27824 0.71 0.381713
Target:  5'- cGCGCGCGcugcccgcGGUggcgcCGGCCGCGCCGcUGCu -3'
miRNA:   3'- uCGCGCGU--------CUA-----GUUGGCGUGGCaAUG- -5'
26459 5' -54.2 NC_005357.1 + 28076 0.69 0.512733
Target:  5'- cAGCGgGCAGGU-GGCCGCGgCGUc-- -3'
miRNA:   3'- -UCGCgCGUCUAgUUGGCGUgGCAaug -5'
26459 5' -54.2 NC_005357.1 + 28123 0.67 0.635967
Target:  5'- cGCGCGcCAGuUCAgcaacgacguggGCCGCAUCGccgACa -3'
miRNA:   3'- uCGCGC-GUCuAGU------------UGGCGUGGCaa-UG- -5'
26459 5' -54.2 NC_005357.1 + 28159 0.74 0.260842
Target:  5'- cGGUG-GuCAGAUCGACCaCGCCGUUGCc -3'
miRNA:   3'- -UCGCgC-GUCUAGUUGGcGUGGCAAUG- -5'
26459 5' -54.2 NC_005357.1 + 28188 0.71 0.409969
Target:  5'- uGCGCGUGGAcgacgcacUUAACCGCGCCa---- -3'
miRNA:   3'- uCGCGCGUCU--------AGUUGGCGUGGcaaug -5'
26459 5' -54.2 NC_005357.1 + 28202 0.66 0.692606
Target:  5'- cGGCGCcuugucCAGGUCGGCCaCGCCGa--- -3'
miRNA:   3'- -UCGCGc-----GUCUAGUUGGcGUGGCaaug -5'
26459 5' -54.2 NC_005357.1 + 28236 0.73 0.2973
Target:  5'- -aCGCGCGGGUCgGACUGCGCCaggcucaccauGUUGCg -3'
miRNA:   3'- ucGCGCGUCUAG-UUGGCGUGG-----------CAAUG- -5'
26459 5' -54.2 NC_005357.1 + 28573 0.69 0.48066
Target:  5'- cGGCGCGCAcGUCGGCCaccgGCAgCGUg-- -3'
miRNA:   3'- -UCGCGCGUcUAGUUGG----CGUgGCAaug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.