miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26459 5' -54.2 NC_005357.1 + 304 0.66 0.681355
Target:  5'- aGGCGCGCucuuccguccAGggCGuGCCGUACCGggGg -3'
miRNA:   3'- -UCGCGCG----------UCuaGU-UGGCGUGGCaaUg -5'
26459 5' -54.2 NC_005357.1 + 605 0.71 0.390986
Target:  5'- cGCcUGCGGGUCGGCCagcaGCGCCGUggACa -3'
miRNA:   3'- uCGcGCGUCUAGUUGG----CGUGGCAa-UG- -5'
26459 5' -54.2 NC_005357.1 + 833 0.71 0.381713
Target:  5'- cGCGCGCAGAgacagCgAGCCG-ACCGUgGCc -3'
miRNA:   3'- uCGCGCGUCUa----G-UUGGCgUGGCAaUG- -5'
26459 5' -54.2 NC_005357.1 + 2134 0.78 0.130142
Target:  5'- cGUGCaGCAGccgGUCAACCGCGCCGccgUACa -3'
miRNA:   3'- uCGCG-CGUC---UAGUUGGCGUGGCa--AUG- -5'
26459 5' -54.2 NC_005357.1 + 2579 0.68 0.534596
Target:  5'- cAGCGCGUGcGcgCGcuuGCCGCcCUGUUGCa -3'
miRNA:   3'- -UCGCGCGU-CuaGU---UGGCGuGGCAAUG- -5'
26459 5' -54.2 NC_005357.1 + 3009 0.66 0.692606
Target:  5'- aGGCGCgGCGGGUCAuaGCUGC-UCGUc-- -3'
miRNA:   3'- -UCGCG-CGUCUAGU--UGGCGuGGCAaug -5'
26459 5' -54.2 NC_005357.1 + 3548 0.71 0.409969
Target:  5'- -cCGCGCAGucccgcCAACCGCGCCGc--- -3'
miRNA:   3'- ucGCGCGUCua----GUUGGCGUGGCaaug -5'
26459 5' -54.2 NC_005357.1 + 4036 0.71 0.390986
Target:  5'- uGcCGCGCGGGUCGAgCGCAgCCGg--- -3'
miRNA:   3'- uC-GCGCGUCUAGUUgGCGU-GGCaaug -5'
26459 5' -54.2 NC_005357.1 + 4193 0.66 0.703795
Target:  5'- uGGCGgGCAuGUUGGCCGCGagcaCGUcGCg -3'
miRNA:   3'- -UCGCgCGUcUAGUUGGCGUg---GCAaUG- -5'
26459 5' -54.2 NC_005357.1 + 4531 0.66 0.670053
Target:  5'- uGGCGUGCuGggCggUCGUGCCGccGCg -3'
miRNA:   3'- -UCGCGCGuCuaGuuGGCGUGGCaaUG- -5'
26459 5' -54.2 NC_005357.1 + 6175 0.67 0.613205
Target:  5'- cAGCGCagGCcGGUCuuGCCGCAgCGuUUGCa -3'
miRNA:   3'- -UCGCG--CGuCUAGu-UGGCGUgGC-AAUG- -5'
26459 5' -54.2 NC_005357.1 + 7486 0.66 0.647348
Target:  5'- -uCGaC-CAGAUCGACCGCGCCcagcagGUUGCc -3'
miRNA:   3'- ucGC-GcGUCUAGUUGGCGUGG------CAAUG- -5'
26459 5' -54.2 NC_005357.1 + 7634 0.66 0.681355
Target:  5'- gGGgGCGCGGcUCGACCcaCGCCGg--- -3'
miRNA:   3'- -UCgCGCGUCuAGUUGGc-GUGGCaaug -5'
26459 5' -54.2 NC_005357.1 + 7749 0.66 0.681355
Target:  5'- -cUGCGCAG-UCAGCgauugcaGCACCGgcGCg -3'
miRNA:   3'- ucGCGCGUCuAGUUGg------CGUGGCaaUG- -5'
26459 5' -54.2 NC_005357.1 + 7903 0.75 0.22811
Target:  5'- cGUGCGUAGAUCGccaGCUGC-UCGUUGCg -3'
miRNA:   3'- uCGCGCGUCUAGU---UGGCGuGGCAAUG- -5'
26459 5' -54.2 NC_005357.1 + 7973 0.67 0.635967
Target:  5'- cGGCGCGCA--UCGgguuuccaugucGCCGCGCuCGuUUGCc -3'
miRNA:   3'- -UCGCGCGUcuAGU------------UGGCGUG-GC-AAUG- -5'
26459 5' -54.2 NC_005357.1 + 8144 0.69 0.523621
Target:  5'- gGGCGUGCGGGugUCGG-CGCugCGUcccUGCg -3'
miRNA:   3'- -UCGCGCGUCU--AGUUgGCGugGCA---AUG- -5'
26459 5' -54.2 NC_005357.1 + 8785 0.77 0.173039
Target:  5'- cGCgGCGCAcgaugGGUCGGCCGCGCCGgucagUACc -3'
miRNA:   3'- uCG-CGCGU-----CUAGUUGGCGUGGCa----AUG- -5'
26459 5' -54.2 NC_005357.1 + 10597 0.66 0.658714
Target:  5'- aGGCGCGCAGc----CUGCACCGc--- -3'
miRNA:   3'- -UCGCGCGUCuaguuGGCGUGGCaaug -5'
26459 5' -54.2 NC_005357.1 + 10728 0.66 0.692606
Target:  5'- cGGCGgGCuGGUCAggcgguGCUGCAgCaGUUACu -3'
miRNA:   3'- -UCGCgCGuCUAGU------UGGCGUgG-CAAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.