miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2646 5' -56.5 NC_001491.2 + 35296 0.66 0.846611
Target:  5'- -cCCGGGAgCGcCACCU-CAGCCGCGc -3'
miRNA:   3'- gaGGCUUUgGC-GUGGGuGUCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 39226 0.67 0.830093
Target:  5'- ---aGAGGCgGCGCCCGCAuccCCACAUa -3'
miRNA:   3'- gaggCUUUGgCGUGGGUGUc--GGUGUA- -5'
2646 5' -56.5 NC_001491.2 + 39438 0.67 0.821556
Target:  5'- --gCGAAGCCGCggGCCC-CAGUCGCc- -3'
miRNA:   3'- gagGCUUUGGCG--UGGGuGUCGGUGua -5'
2646 5' -56.5 NC_001491.2 + 49218 0.72 0.55433
Target:  5'- gCUCCGGGACCGagagagcgagauCACCCACcuCCGCGa -3'
miRNA:   3'- -GAGGCUUUGGC------------GUGGGUGucGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 52839 0.72 0.544255
Target:  5'- -gCCaGggGCCaGCACCCaggcACAGCCGCGg -3'
miRNA:   3'- gaGG-CuuUGG-CGUGGG----UGUCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 53556 0.68 0.757374
Target:  5'- -cUCG-AACgGCACCCGCAGCUAgCAUc -3'
miRNA:   3'- gaGGCuUUGgCGUGGGUGUCGGU-GUA- -5'
2646 5' -56.5 NC_001491.2 + 56622 0.7 0.667221
Target:  5'- gCUCCacgcuGGCCGUagcaACCCACAGCUACu- -3'
miRNA:   3'- -GAGGcu---UUGGCG----UGGGUGUCGGUGua -5'
2646 5' -56.5 NC_001491.2 + 56689 0.71 0.614658
Target:  5'- -cCCGAAucuggccACCGCAUCCAaAGCCAUAg -3'
miRNA:   3'- gaGGCUU-------UGGCGUGGGUgUCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 84572 0.67 0.803964
Target:  5'- -aCCGuGACCGCgcaGCCCcaAGCCGCAc -3'
miRNA:   3'- gaGGCuUUGGCG---UGGGugUCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 90110 0.69 0.697861
Target:  5'- uUCCGccGCCGCGCgCCGCucggaGGCUACAc -3'
miRNA:   3'- gAGGCuuUGGCGUG-GGUG-----UCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 90316 0.67 0.803964
Target:  5'- gCUCCGGGgguaccacuauGCCGCuGCCCACAGUgCGgGUa -3'
miRNA:   3'- -GAGGCUU-----------UGGCG-UGGGUGUCG-GUgUA- -5'
2646 5' -56.5 NC_001491.2 + 99869 0.7 0.677475
Target:  5'- uUCUGGGcaggucccGCCGcCACCCAC-GCCGCAg -3'
miRNA:   3'- gAGGCUU--------UGGC-GUGGGUGuCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 104963 0.69 0.737886
Target:  5'- -gCCGggGCCGCGgCgGgGGCCGCc- -3'
miRNA:   3'- gaGGCuuUGGCGUgGgUgUCGGUGua -5'
2646 5' -56.5 NC_001491.2 + 104996 0.69 0.737886
Target:  5'- -gCCGggGCCGCGgCgGgGGCCGCc- -3'
miRNA:   3'- gaGGCuuUGGCGUgGgUgUCGGUGua -5'
2646 5' -56.5 NC_001491.2 + 105029 0.69 0.737886
Target:  5'- -gCCGggGCCGCGgCgGgGGCCGCc- -3'
miRNA:   3'- gaGGCuuUGGCGUgGgUgUCGGUGua -5'
2646 5' -56.5 NC_001491.2 + 105062 0.69 0.737886
Target:  5'- -gCCGggGCCGCGgCgGgGGCCGCc- -3'
miRNA:   3'- gaGGCuuUGGCGUgGgUgUCGGUGua -5'
2646 5' -56.5 NC_001491.2 + 105095 0.69 0.737886
Target:  5'- -gCCGggGCCGCGgCgGgGGCCGCc- -3'
miRNA:   3'- gaGGCuuUGGCGUgGgUgUCGGUGua -5'
2646 5' -56.5 NC_001491.2 + 112697 1.05 0.004021
Target:  5'- cCUCCGAAACCGCACCCACAGCCACAUc -3'
miRNA:   3'- -GAGGCUUUGGCGUGGGUGUCGGUGUA- -5'
2646 5' -56.5 NC_001491.2 + 118276 0.7 0.667221
Target:  5'- -gCCaGAGCCGCACCCAaacGCCGCc- -3'
miRNA:   3'- gaGGcUUUGGCGUGGGUgu-CGGUGua -5'
2646 5' -56.5 NC_001491.2 + 132167 0.68 0.776413
Target:  5'- uCUCCGccuACCGCGCaggGCGGCUACGc -3'
miRNA:   3'- -GAGGCuu-UGGCGUGgg-UGUCGGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.