miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2646 5' -56.5 NC_001491.2 + 1554 0.68 0.766954
Target:  5'- gCUCCGAGggcuccacgGCCccaGCGCCgCGcCGGCCGCAg -3'
miRNA:   3'- -GAGGCUU---------UGG---CGUGG-GU-GUCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 5212 0.66 0.884332
Target:  5'- -aCCGGgucGGCCGCGucCCCACcGCCGgGUg -3'
miRNA:   3'- gaGGCU---UUGGCGU--GGGUGuCGGUgUA- -5'
2646 5' -56.5 NC_001491.2 + 5258 0.68 0.747681
Target:  5'- -cCCGGcGACCGUucCCCGgGGCCACGg -3'
miRNA:   3'- gaGGCU-UUGGCGu-GGGUgUCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 10123 0.7 0.646635
Target:  5'- gCUCCGGAGCgGCgccgggccGCCCGCggaggccuGGCCGCGc -3'
miRNA:   3'- -GAGGCUUUGgCG--------UGGGUG--------UCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 10520 0.74 0.446758
Target:  5'- -gCCGcgGCguaccugCGCGCCCGCGGCCGCAa -3'
miRNA:   3'- gaGGCuuUG-------GCGUGGGUGUCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 12596 0.69 0.707975
Target:  5'- cCUCCGAcGGCCGcCGCCgcggcaGCGGCCGCc- -3'
miRNA:   3'- -GAGGCU-UUGGC-GUGGg-----UGUCGGUGua -5'
2646 5' -56.5 NC_001491.2 + 21689 0.69 0.737886
Target:  5'- uUCUGAguccAACCGCACCCACcaacagGGUCugGg -3'
miRNA:   3'- gAGGCU----UUGGCGUGGGUG------UCGGugUa -5'
2646 5' -56.5 NC_001491.2 + 24621 0.73 0.456925
Target:  5'- -cCCGGggcGGCCGCugCCGCGGCgGCGg -3'
miRNA:   3'- gaGGCU---UUGGCGugGGUGUCGgUGUa -5'
2646 5' -56.5 NC_001491.2 + 25752 0.67 0.812843
Target:  5'- ---aGggGCCagGCAgcCCCGCAGCCGCGc -3'
miRNA:   3'- gaggCuuUGG--CGU--GGGUGUCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 28178 0.67 0.830093
Target:  5'- aCUCCGAAacGCUGCucucCCCGCuGGCCuCGUc -3'
miRNA:   3'- -GAGGCUU--UGGCGu---GGGUG-UCGGuGUA- -5'
2646 5' -56.5 NC_001491.2 + 29542 0.69 0.694816
Target:  5'- -gCCGGguAACCGUAuuuuagcgccccccCCCAUAGCCGCAc -3'
miRNA:   3'- gaGGCU--UUGGCGU--------------GGGUGUCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 31484 0.67 0.803964
Target:  5'- gUCCGAGcgcccGCCGCGgaacCCCGCcaccGGCCACc- -3'
miRNA:   3'- gAGGCUU-----UGGCGU----GGGUG----UCGGUGua -5'
2646 5' -56.5 NC_001491.2 + 31586 0.67 0.812843
Target:  5'- -gCCGGAGCUaGCACgCCAUGGCCAg-- -3'
miRNA:   3'- gaGGCUUUGG-CGUG-GGUGUCGGUgua -5'
2646 5' -56.5 NC_001491.2 + 32058 0.67 0.830093
Target:  5'- -aCCGAGACCuGCccggggucCCCGCAGCC-CGa -3'
miRNA:   3'- gaGGCUUUGG-CGu-------GGGUGUCGGuGUa -5'
2646 5' -56.5 NC_001491.2 + 32395 0.67 0.794927
Target:  5'- gCUCCGgcGCCGCuuCCCcCGGCgCACc- -3'
miRNA:   3'- -GAGGCuuUGGCGu-GGGuGUCG-GUGua -5'
2646 5' -56.5 NC_001491.2 + 32424 0.67 0.830093
Target:  5'- gCUCCGGcuccAGCUucgGCGCCCGCucccAGCCGCc- -3'
miRNA:   3'- -GAGGCU----UUGG---CGUGGGUG----UCGGUGua -5'
2646 5' -56.5 NC_001491.2 + 33397 0.69 0.737886
Target:  5'- -cCCGGcccaggccGCCGCugCCGCGGCCAg-- -3'
miRNA:   3'- gaGGCUu-------UGGCGugGGUGUCGGUgua -5'
2646 5' -56.5 NC_001491.2 + 33437 0.7 0.646635
Target:  5'- -cCCGAGGCCccgGCGCCCuCGGuCCGCGUc -3'
miRNA:   3'- gaGGCUUUGG---CGUGGGuGUC-GGUGUA- -5'
2646 5' -56.5 NC_001491.2 + 33504 0.71 0.584854
Target:  5'- -cCCGAcGCaagGCugCCGCGGCCGCGg -3'
miRNA:   3'- gaGGCUuUGg--CGugGGUGUCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 33822 0.71 0.595107
Target:  5'- gCUCCGAcgAGCUGCGCCuCGCGGUgCGCGc -3'
miRNA:   3'- -GAGGCU--UUGGCGUGG-GUGUCG-GUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.