miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2646 5' -56.5 NC_001491.2 + 112697 1.05 0.004021
Target:  5'- cCUCCGAAACCGCACCCACAGCCACAUc -3'
miRNA:   3'- -GAGGCUUUGGCGUGGGUGUCGGUGUA- -5'
2646 5' -56.5 NC_001491.2 + 10520 0.74 0.446758
Target:  5'- -gCCGcgGCguaccugCGCGCCCGCGGCCGCAa -3'
miRNA:   3'- gaGGCuuUG-------GCGUGGGUGUCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 24621 0.73 0.456925
Target:  5'- -cCCGGggcGGCCGCugCCGCGGCgGCGg -3'
miRNA:   3'- gaGGCU---UUGGCGugGGUGUCGgUGUa -5'
2646 5' -56.5 NC_001491.2 + 52839 0.72 0.544255
Target:  5'- -gCCaGggGCCaGCACCCaggcACAGCCGCGg -3'
miRNA:   3'- gaGG-CuuUGG-CGUGGG----UGUCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 49218 0.72 0.55433
Target:  5'- gCUCCGGGACCGagagagcgagauCACCCACcuCCGCGa -3'
miRNA:   3'- -GAGGCUUUGGC------------GUGGGUGucGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 33504 0.71 0.584854
Target:  5'- -cCCGAcGCaagGCugCCGCGGCCGCGg -3'
miRNA:   3'- gaGGCUuUGg--CGugGGUGUCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 33822 0.71 0.595107
Target:  5'- gCUCCGAcgAGCUGCGCCuCGCGGUgCGCGc -3'
miRNA:   3'- -GAGGCU--UUGGCGUGG-GUGUCG-GUGUa -5'
2646 5' -56.5 NC_001491.2 + 56689 0.71 0.614658
Target:  5'- -cCCGAAucuggccACCGCAUCCAaAGCCAUAg -3'
miRNA:   3'- gaGGCUU-------UGGCGUGGGUgUCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 10123 0.7 0.646635
Target:  5'- gCUCCGGAGCgGCgccgggccGCCCGCggaggccuGGCCGCGc -3'
miRNA:   3'- -GAGGCUUUGgCG--------UGGGUG--------UCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 33437 0.7 0.646635
Target:  5'- -cCCGAGGCCccgGCGCCCuCGGuCCGCGUc -3'
miRNA:   3'- gaGGCUUUGG---CGUGGGuGUC-GGUGUA- -5'
2646 5' -56.5 NC_001491.2 + 56622 0.7 0.667221
Target:  5'- gCUCCacgcuGGCCGUagcaACCCACAGCUACu- -3'
miRNA:   3'- -GAGGcu---UUGGCG----UGGGUGUCGGUGua -5'
2646 5' -56.5 NC_001491.2 + 118276 0.7 0.667221
Target:  5'- -gCCaGAGCCGCACCCAaacGCCGCc- -3'
miRNA:   3'- gaGGcUUUGGCGUGGGUgu-CGGUGua -5'
2646 5' -56.5 NC_001491.2 + 99869 0.7 0.677475
Target:  5'- uUCUGGGcaggucccGCCGcCACCCAC-GCCGCAg -3'
miRNA:   3'- gAGGCUU--------UGGC-GUGGGUGuCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 29542 0.69 0.694816
Target:  5'- -gCCGGguAACCGUAuuuuagcgccccccCCCAUAGCCGCAc -3'
miRNA:   3'- gaGGCU--UUGGCGU--------------GGGUGUCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 90110 0.69 0.697861
Target:  5'- uUCCGccGCCGCGCgCCGCucggaGGCUACAc -3'
miRNA:   3'- gAGGCuuUGGCGUG-GGUG-----UCGGUGUa -5'
2646 5' -56.5 NC_001491.2 + 12596 0.69 0.707975
Target:  5'- cCUCCGAcGGCCGcCGCCgcggcaGCGGCCGCc- -3'
miRNA:   3'- -GAGGCU-UUGGC-GUGGg-----UGUCGGUGua -5'
2646 5' -56.5 NC_001491.2 + 33397 0.69 0.737886
Target:  5'- -cCCGGcccaggccGCCGCugCCGCGGCCAg-- -3'
miRNA:   3'- gaGGCUu-------UGGCGugGGUGUCGGUgua -5'
2646 5' -56.5 NC_001491.2 + 105062 0.69 0.737886
Target:  5'- -gCCGggGCCGCGgCgGgGGCCGCc- -3'
miRNA:   3'- gaGGCuuUGGCGUgGgUgUCGGUGua -5'
2646 5' -56.5 NC_001491.2 + 105029 0.69 0.737886
Target:  5'- -gCCGggGCCGCGgCgGgGGCCGCc- -3'
miRNA:   3'- gaGGCuuUGGCGUgGgUgUCGGUGua -5'
2646 5' -56.5 NC_001491.2 + 104963 0.69 0.737886
Target:  5'- -gCCGggGCCGCGgCgGgGGCCGCc- -3'
miRNA:   3'- gaGGCuuUGGCGUgGgUgUCGGUGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.