miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26461 3' -55.3 NC_005357.1 + 14350 0.68 0.535709
Target:  5'- cUGCUG-GUUCGCGGuguCCuggaaggCGGgGGCa -3'
miRNA:   3'- -ACGACgCAAGCGUCu--GGua-----GCUgCCG- -5'
26461 3' -55.3 NC_005357.1 + 14372 0.7 0.409042
Target:  5'- cGCUGUucgaGCAGACCGUCGccgacguguucuuCGGCg -3'
miRNA:   3'- aCGACGcaagCGUCUGGUAGCu------------GCCG- -5'
26461 3' -55.3 NC_005357.1 + 14825 0.74 0.238554
Target:  5'- cGCUGCcUUCGCccaGGucgauGCCGUUGGCGGCc -3'
miRNA:   3'- aCGACGcAAGCG---UC-----UGGUAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 15590 0.68 0.535709
Target:  5'- cGCUGCGgaUGCAccgcGCCAUCGGCcaGGa -3'
miRNA:   3'- aCGACGCaaGCGUc---UGGUAGCUG--CCg -5'
26461 3' -55.3 NC_005357.1 + 18280 0.68 0.524904
Target:  5'- uUGCcgGCcgUCaGCGGGCCGguggCGACGGUg -3'
miRNA:   3'- -ACGa-CGcaAG-CGUCUGGUa---GCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 18875 0.67 0.601878
Target:  5'- cUGCcgGCGaugUCgGCcgAGGCCAUCGACcGCg -3'
miRNA:   3'- -ACGa-CGCa--AG-CG--UCUGGUAGCUGcCG- -5'
26461 3' -55.3 NC_005357.1 + 19051 0.69 0.440996
Target:  5'- gUGCUGauuUUCaGCGGGCacgccaccguguuCAUCGGCGGCg -3'
miRNA:   3'- -ACGACgc-AAG-CGUCUG-------------GUAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 19586 0.66 0.635442
Target:  5'- cGCaGCGcgCGCugucGGCUGUCGGCaGCg -3'
miRNA:   3'- aCGaCGCaaGCGu---CUGGUAGCUGcCG- -5'
26461 3' -55.3 NC_005357.1 + 20583 0.72 0.293681
Target:  5'- -aCUGCGcaaggCGCAGGCCAUCGACu-- -3'
miRNA:   3'- acGACGCaa---GCGUCUGGUAGCUGccg -5'
26461 3' -55.3 NC_005357.1 + 20762 0.74 0.226197
Target:  5'- cGCUGCGccgCGCucGACuCAUCGcGCGGCu -3'
miRNA:   3'- aCGACGCaa-GCGu-CUG-GUAGC-UGCCG- -5'
26461 3' -55.3 NC_005357.1 + 21274 0.68 0.491971
Target:  5'- cGCUGUugaaccaGggCGCGGACa--CGGCGGCc -3'
miRNA:   3'- aCGACG-------CaaGCGUCUGguaGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 22413 0.71 0.358255
Target:  5'- cGCgUGaCGUUCGCcaGCCAcgccUUGACGGCg -3'
miRNA:   3'- aCG-AC-GCAAGCGucUGGU----AGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 22439 0.67 0.568554
Target:  5'- aGUUGgcgaGUUcuaCGCGGA-CAUCGGCGGCc -3'
miRNA:   3'- aCGACg---CAA---GCGUCUgGUAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 23710 0.67 0.557541
Target:  5'- gGUaGCGcccaggUCGCGGGCCAgugccUCGGUGGCg -3'
miRNA:   3'- aCGaCGCa-----AGCGUCUGGU-----AGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 24144 0.69 0.441986
Target:  5'- gGCUGCG--CGCcuGGCCcagcgccUCGACGGCu -3'
miRNA:   3'- aCGACGCaaGCGu-CUGGu------AGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 24332 0.66 0.624243
Target:  5'- cGCgaagGCGUccugguUCGCGccGGCU-UCGGCGGCc -3'
miRNA:   3'- aCGa---CGCA------AGCGU--CUGGuAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 26169 0.7 0.403389
Target:  5'- cUGCgaUGCGgUCGCAGAUUucgguggCGAUGGCu -3'
miRNA:   3'- -ACG--ACGCaAGCGUCUGGua-----GCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 26292 0.67 0.601878
Target:  5'- aGCgUGCGgcCGCAGuccuacgucgggGCCAcCGACGuGCa -3'
miRNA:   3'- aCG-ACGCaaGCGUC------------UGGUaGCUGC-CG- -5'
26461 3' -55.3 NC_005357.1 + 26656 0.71 0.341219
Target:  5'- aUGCcgucgUGCG-UCGC--ACCAUUGGCGGCa -3'
miRNA:   3'- -ACG-----ACGCaAGCGucUGGUAGCUGCCG- -5'
26461 3' -55.3 NC_005357.1 + 27009 0.7 0.422423
Target:  5'- aGCUGUGgUUGCGcGugCAUCGGucgucCGGCa -3'
miRNA:   3'- aCGACGCaAGCGU-CugGUAGCU-----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.