Results 41 - 60 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26461 | 3' | -55.3 | NC_005357.1 | + | 29824 | 0.69 | 0.482587 |
Target: 5'- cGCgucgGCGccaugCGCAaauUCAUCGACGGCu -3' miRNA: 3'- aCGa---CGCaa---GCGUcu-GGUAGCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 7295 | 0.69 | 0.462052 |
Target: 5'- cGUaGUGcUCGCGGauggcGCCGUCGAUGGUc -3' miRNA: 3'- aCGaCGCaAGCGUC-----UGGUAGCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 24144 | 0.69 | 0.441986 |
Target: 5'- gGCUGCG--CGCcuGGCCcagcgccUCGACGGCu -3' miRNA: 3'- aCGACGCaaGCGu-CUGGu------AGCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 19051 | 0.69 | 0.440996 |
Target: 5'- gUGCUGauuUUCaGCGGGCacgccaccguguuCAUCGGCGGCg -3' miRNA: 3'- -ACGACgc-AAG-CGUCUG-------------GUAGCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 30580 | 0.69 | 0.43214 |
Target: 5'- cGCgGgGUUCGCccAGGCCAaCcGCGGCg -3' miRNA: 3'- aCGaCgCAAGCG--UCUGGUaGcUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 38319 | 0.69 | 0.43214 |
Target: 5'- cGCUGCag-CGCAGGCUggCGgaaacaccACGGCg -3' miRNA: 3'- aCGACGcaaGCGUCUGGuaGC--------UGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 27009 | 0.7 | 0.422423 |
Target: 5'- aGCUGUGgUUGCGcGugCAUCGGucgucCGGCa -3' miRNA: 3'- aCGACGCaAGCGU-CugGUAGCU-----GCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 6194 | 0.7 | 0.412838 |
Target: 5'- cGCaGCGUUUGCAGG----UGACGGCg -3' miRNA: 3'- aCGaCGCAAGCGUCUgguaGCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 14372 | 0.7 | 0.409042 |
Target: 5'- cGCUGUucgaGCAGACCGUCGccgacguguucuuCGGCg -3' miRNA: 3'- aCGACGcaagCGUCUGGUAGCu------------GCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 26169 | 0.7 | 0.403389 |
Target: 5'- cUGCgaUGCGgUCGCAGAUUucgguggCGAUGGCu -3' miRNA: 3'- -ACG--ACGCaAGCGUCUGGua-----GCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 4811 | 0.71 | 0.375879 |
Target: 5'- cGCUGCGggaUUGCuGGCCggCGACaGGUc -3' miRNA: 3'- aCGACGCa--AGCGuCUGGuaGCUG-CCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 1145 | 0.71 | 0.366994 |
Target: 5'- aGCgGcCGUUUGCGcucGCCGUCGAUGGUg -3' miRNA: 3'- aCGaC-GCAAGCGUc--UGGUAGCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 22413 | 0.71 | 0.358255 |
Target: 5'- cGCgUGaCGUUCGCcaGCCAcgccUUGACGGCg -3' miRNA: 3'- aCG-AC-GCAAGCGucUGGU----AGCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 12282 | 0.71 | 0.349663 |
Target: 5'- cGCUGaUGUccgaCGCGGugCAggcCGGCGGCg -3' miRNA: 3'- aCGAC-GCAa---GCGUCugGUa--GCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 26656 | 0.71 | 0.341219 |
Target: 5'- aUGCcgucgUGCG-UCGC--ACCAUUGGCGGCa -3' miRNA: 3'- -ACG-----ACGCaAGCGucUGGUAGCUGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 1924 | 0.71 | 0.341219 |
Target: 5'- -cCUGCGUuccagUCGCGGAUCGUCuGCGGg -3' miRNA: 3'- acGACGCA-----AGCGUCUGGUAGcUGCCg -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 40538 | 0.71 | 0.332923 |
Target: 5'- cGCUGCuGUUCGCccacccGGCCAgCGcCGGCc -3' miRNA: 3'- aCGACG-CAAGCGu-----CUGGUaGCuGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 28553 | 0.72 | 0.316779 |
Target: 5'- -cUUGCGgcCGCcGGCCAUCG-CGGCg -3' miRNA: 3'- acGACGCaaGCGuCUGGUAGCuGCCG- -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 20583 | 0.72 | 0.293681 |
Target: 5'- -aCUGCGcaaggCGCAGGCCAUCGACu-- -3' miRNA: 3'- acGACGCaa---GCGUCUGGUAGCUGccg -5' |
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26461 | 3' | -55.3 | NC_005357.1 | + | 14825 | 0.74 | 0.238554 |
Target: 5'- cGCUGCcUUCGCccaGGucgauGCCGUUGGCGGCc -3' miRNA: 3'- aCGACGcAAGCG---UC-----UGGUAGCUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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