Results 61 - 68 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26461 | 5' | -59.3 | NC_005357.1 | + | 38648 | 0.68 | 0.318342 |
Target: 5'- -aGGCGCUGgcuuuCGGCacgaCCGAGGCUAcguccAGCg -3' miRNA: 3'- gcUCGUGAU-----GCCGg---GGCUCCGGU-----UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 41427 | 0.68 | 0.310664 |
Target: 5'- uCGA-CGCUGCGGUgaaCCaCGGcaccGGCCAGGCg -3' miRNA: 3'- -GCUcGUGAUGCCG---GG-GCU----CCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 29679 | 0.69 | 0.282072 |
Target: 5'- gGAGCGCgccaagcgucugggcGCGGCaCCCagcaccaacGGGCCGGGCg -3' miRNA: 3'- gCUCGUGa--------------UGCCG-GGGc--------UCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 8269 | 0.69 | 0.281367 |
Target: 5'- cCGGGCAUU-CGGCuUCCaGGGCCAcGCu -3' miRNA: 3'- -GCUCGUGAuGCCG-GGGcUCCGGUuCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 18694 | 0.69 | 0.26756 |
Target: 5'- -uGGCGCUgcuGCGcGCCaCCGAGGCacuGGCc -3' miRNA: 3'- gcUCGUGA---UGC-CGG-GGCUCCGgu-UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 34445 | 0.7 | 0.254955 |
Target: 5'- aCGAGCGCggcgacauggaaaccACGaugcGCgCCGAGGCCAcgGGCa -3' miRNA: 3'- -GCUCGUGa--------------UGC----CGgGGCUCCGGU--UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 31278 | 0.7 | 0.254305 |
Target: 5'- aCGuGCGCagGCGGCCCagcaGcAGGCCGAacuGCu -3' miRNA: 3'- -GCuCGUGa-UGCCGGGg---C-UCCGGUU---CG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 35146 | 1.12 | 0.000182 |
Target: 5'- gCGAGCACUACGGCCCCGAGGCCAAGCa -3' miRNA: 3'- -GCUCGUGAUGCCGGGGCUCCGGUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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