miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26461 5' -59.3 NC_005357.1 + 14083 0.66 0.41203
Target:  5'- --cGCGC-GCuGCCCgaCGAGGCCAAGg -3'
miRNA:   3'- gcuCGUGaUGcCGGG--GCUCCGGUUCg -5'
26461 5' -59.3 NC_005357.1 + 40945 0.66 0.421356
Target:  5'- -cAGCACUGCGauaCCCCGGccuGCCAGGa -3'
miRNA:   3'- gcUCGUGAUGCc--GGGGCUc--CGGUUCg -5'
26461 5' -59.3 NC_005357.1 + 21181 0.66 0.430809
Target:  5'- uGGGCAU--CGaCCCCGAGuugaucguGCCGGGCa -3'
miRNA:   3'- gCUCGUGauGCcGGGGCUC--------CGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 31856 0.66 0.430809
Target:  5'- uGGGUACUACG--CCCGAGGCgCuguuccAGCa -3'
miRNA:   3'- gCUCGUGAUGCcgGGGCUCCG-Gu-----UCG- -5'
26461 5' -59.3 NC_005357.1 + 33337 0.66 0.430809
Target:  5'- -cGGCAagaACGGCCUCGcGGCCA-GUg -3'
miRNA:   3'- gcUCGUga-UGCCGGGGCuCCGGUuCG- -5'
26461 5' -59.3 NC_005357.1 + 41109 0.66 0.430809
Target:  5'- --cGCGCUuguCGGCCUgGuGGCCGucgcccugGGCg -3'
miRNA:   3'- gcuCGUGAu--GCCGGGgCuCCGGU--------UCG- -5'
26461 5' -59.3 NC_005357.1 + 29869 0.66 0.437499
Target:  5'- gCGcAGCGCgaggcCGGCaagaaauucaccgaCgCCGAGGUCGAGCa -3'
miRNA:   3'- -GC-UCGUGau---GCCG--------------G-GGCUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 27054 0.66 0.440384
Target:  5'- --cGCACgcggACGcGCUcaCCGAGGUgAAGCa -3'
miRNA:   3'- gcuCGUGa---UGC-CGG--GGCUCCGgUUCG- -5'
26461 5' -59.3 NC_005357.1 + 10341 0.7 0.23544
Target:  5'- uGAGCAacGCGGCCguguuggCGGGGCCGaugAGCa -3'
miRNA:   3'- gCUCGUgaUGCCGGg------GCUCCGGU---UCG- -5'
26461 5' -59.3 NC_005357.1 + 35146 1.12 0.000182
Target:  5'- gCGAGCACUACGGCCCCGAGGCCAAGCa -3'
miRNA:   3'- -GCUCGUGAUGCCGGGGCUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 1960 0.8 0.045576
Target:  5'- uCGAGCGC-GCGGCCCUGGGGgaAGGCa -3'
miRNA:   3'- -GCUCGUGaUGCCGGGGCUCCggUUCG- -5'
26461 5' -59.3 NC_005357.1 + 14995 0.79 0.055795
Target:  5'- aGGGC-CUGCGGCCgCCGGGcgcggugcGCCAGGCg -3'
miRNA:   3'- gCUCGuGAUGCCGG-GGCUC--------CGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 9561 0.75 0.110411
Target:  5'- uCGGGCGCgacaaucuCGGCgCCGAccgucugcGGCCAGGCg -3'
miRNA:   3'- -GCUCGUGau------GCCGgGGCU--------CCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 27500 0.74 0.137853
Target:  5'- uGGGCGCgcaguCGGCaCuuGAGGCCGgccAGCa -3'
miRNA:   3'- gCUCGUGau---GCCG-GggCUCCGGU---UCG- -5'
26461 5' -59.3 NC_005357.1 + 30828 0.72 0.171431
Target:  5'- -uGGCACUGCuGCCCgGcGGCCAgccGGCg -3'
miRNA:   3'- gcUCGUGAUGcCGGGgCuCCGGU---UCG- -5'
26461 5' -59.3 NC_005357.1 + 7138 0.71 0.211572
Target:  5'- gCGaAGUcgucgGCUGCGGCCUgGAugaccagGGCCGGGCg -3'
miRNA:   3'- -GC-UCG-----UGAUGCCGGGgCU-------CCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 23728 0.7 0.223526
Target:  5'- cCGAuGCGCUGCuGCUgaCCGAGGCCc-GCg -3'
miRNA:   3'- -GCU-CGUGAUGcCGG--GGCUCCGGuuCG- -5'
26461 5' -59.3 NC_005357.1 + 19196 0.7 0.229417
Target:  5'- gCGAgGCGCgguCGGUggCCGAGGCCGAGg -3'
miRNA:   3'- -GCU-CGUGau-GCCGg-GGCUCCGGUUCg -5'
26461 5' -59.3 NC_005357.1 + 32701 0.68 0.332519
Target:  5'- aCGAGCAgUucgcccGCGGCUUCGAGGCguaucucuucgaGGGCa -3'
miRNA:   3'- -GCUCGUgA------UGCCGGGGCUCCGg-----------UUCG- -5'
26461 5' -59.3 NC_005357.1 + 33856 0.7 0.247247
Target:  5'- --cGCACgcGCGGCCUacgacgcccaggaUGAGGUCGAGCg -3'
miRNA:   3'- gcuCGUGa-UGCCGGG-------------GCUCCGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.