Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26461 | 5' | -59.3 | NC_005357.1 | + | 37124 | 0.67 | 0.358007 |
Target: 5'- -cGGC-CUACGGCCUCGAccuGCCAgacaugcAGCa -3' miRNA: 3'- gcUCGuGAUGCCGGGGCUc--CGGU-------UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 21316 | 0.67 | 0.358852 |
Target: 5'- uCGAGCACUuCGGgCuuGAugccGGCCAccGCg -3' miRNA: 3'- -GCUCGUGAuGCCgGggCU----CCGGUu-CG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 22279 | 0.67 | 0.358852 |
Target: 5'- cCGAGCAaUACgaauuccaGGcCCCCGAaGGCguGGCa -3' miRNA: 3'- -GCUCGUgAUG--------CC-GGGGCU-CCGguUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 12436 | 0.67 | 0.367375 |
Target: 5'- gGAGCACgAUGGCCCguuCGAcGGCugcaucCAGGCc -3' miRNA: 3'- gCUCGUGaUGCCGGG---GCU-CCG------GUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 12883 | 0.67 | 0.370823 |
Target: 5'- cCGAGCACggcguggguguccucUGCGGCCagGGGGCacAGCc -3' miRNA: 3'- -GCUCGUG---------------AUGCCGGggCUCCGguUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 7276 | 0.67 | 0.376036 |
Target: 5'- ----uGCUGCuuGGCCUCGGGGCCGuAGUg -3' miRNA: 3'- gcucgUGAUG--CCGGGGCUCCGGU-UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 10532 | 0.67 | 0.384833 |
Target: 5'- -aGGCACU-CGGCCUCGAuGGCgGAa- -3' miRNA: 3'- gcUCGUGAuGCCGGGGCU-CCGgUUcg -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 10894 | 0.67 | 0.384833 |
Target: 5'- cCGAgGCGCUguuuccACGGCaacacagCGAGGCCcAGCa -3' miRNA: 3'- -GCU-CGUGA------UGCCGgg-----GCUCCGGuUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 22196 | 0.67 | 0.384833 |
Target: 5'- gGAGCAa---GGCaCCCaAGGCCAacAGCc -3' miRNA: 3'- gCUCGUgaugCCG-GGGcUCCGGU--UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 27725 | 0.67 | 0.393766 |
Target: 5'- aGGGCAUggaGGCgcaaCUGcAGGCCGGGCu -3' miRNA: 3'- gCUCGUGaugCCGg---GGC-UCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 4883 | 0.67 | 0.393766 |
Target: 5'- -cAGCGCggcgacgGCGGCCUCGuuuucGGCCAcGGUg -3' miRNA: 3'- gcUCGUGa------UGCCGGGGCu----CCGGU-UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 15960 | 0.66 | 0.402832 |
Target: 5'- cCGAauGCcaACUgACGGaUgCCGAGGUCGAGCg -3' miRNA: 3'- -GCU--CG--UGA-UGCC-GgGGCUCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 14083 | 0.66 | 0.41203 |
Target: 5'- --cGCGC-GCuGCCCgaCGAGGCCAAGg -3' miRNA: 3'- gcuCGUGaUGcCGGG--GCUCCGGUUCg -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 35271 | 0.66 | 0.420418 |
Target: 5'- -aAGCGCc-CGGCCCUGgucauccAGGCCGcAGCc -3' miRNA: 3'- gcUCGUGauGCCGGGGC-------UCCGGU-UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 40945 | 0.66 | 0.421356 |
Target: 5'- -cAGCACUGCGauaCCCCGGccuGCCAGGa -3' miRNA: 3'- gcUCGUGAUGCc--GGGGCUc--CGGUUCg -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 41109 | 0.66 | 0.430809 |
Target: 5'- --cGCGCUuguCGGCCUgGuGGCCGucgcccugGGCg -3' miRNA: 3'- gcuCGUGAu--GCCGGGgCuCCGGU--------UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 21181 | 0.66 | 0.430809 |
Target: 5'- uGGGCAU--CGaCCCCGAGuugaucguGCCGGGCa -3' miRNA: 3'- gCUCGUGauGCcGGGGCUC--------CGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 10969 | 0.66 | 0.430809 |
Target: 5'- gGGGaCACUG-GGCCaCCuGuucGGCCAGGCc -3' miRNA: 3'- gCUC-GUGAUgCCGG-GG-Cu--CCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 33337 | 0.66 | 0.430809 |
Target: 5'- -cGGCAagaACGGCCUCGcGGCCA-GUg -3' miRNA: 3'- gcUCGUga-UGCCGGGGCuCCGGUuCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 31856 | 0.66 | 0.430809 |
Target: 5'- uGGGUACUACG--CCCGAGGCgCuguuccAGCa -3' miRNA: 3'- gCUCGUGAUGCcgGGGCUCCG-Gu-----UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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