miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26461 5' -59.3 NC_005357.1 + 31278 0.7 0.254305
Target:  5'- aCGuGCGCagGCGGCCCagcaGcAGGCCGAacuGCu -3'
miRNA:   3'- -GCuCGUGa-UGCCGGGg---C-UCCGGUU---CG- -5'
26461 5' -59.3 NC_005357.1 + 34445 0.7 0.254955
Target:  5'- aCGAGCGCggcgacauggaaaccACGaugcGCgCCGAGGCCAcgGGCa -3'
miRNA:   3'- -GCUCGUGa--------------UGC----CGgGGCUCCGGU--UCG- -5'
26461 5' -59.3 NC_005357.1 + 32354 0.69 0.26756
Target:  5'- aGGuCGCUGCGGUCgccgCCGAGGCCccGGCc -3'
miRNA:   3'- gCUcGUGAUGCCGG----GGCUCCGGu-UCG- -5'
26461 5' -59.3 NC_005357.1 + 18694 0.69 0.26756
Target:  5'- -uGGCGCUgcuGCGcGCCaCCGAGGCacuGGCc -3'
miRNA:   3'- gcUCGUGA---UGC-CGG-GGCUCCGgu-UCG- -5'
26461 5' -59.3 NC_005357.1 + 34067 0.69 0.281367
Target:  5'- uCGAGCGCgGCGGCgCagGAGGUacuGGCa -3'
miRNA:   3'- -GCUCGUGaUGCCGgGg-CUCCGgu-UCG- -5'
26461 5' -59.3 NC_005357.1 + 8269 0.69 0.281367
Target:  5'- cCGGGCAUU-CGGCuUCCaGGGCCAcGCu -3'
miRNA:   3'- -GCUCGUGAuGCCG-GGGcUCCGGUuCG- -5'
26461 5' -59.3 NC_005357.1 + 29679 0.69 0.282072
Target:  5'- gGAGCGCgccaagcgucugggcGCGGCaCCCagcaccaacGGGCCGGGCg -3'
miRNA:   3'- gCUCGUGa--------------UGCCG-GGGc--------UCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 41427 0.68 0.310664
Target:  5'- uCGA-CGCUGCGGUgaaCCaCGGcaccGGCCAGGCg -3'
miRNA:   3'- -GCUcGUGAUGCCG---GG-GCU----CCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 1314 0.68 0.318342
Target:  5'- aGGGCG--ACGGCCaCC-AGGCCGacaAGCg -3'
miRNA:   3'- gCUCGUgaUGCCGG-GGcUCCGGU---UCG- -5'
26461 5' -59.3 NC_005357.1 + 12665 0.68 0.318342
Target:  5'- uCGcGCACgcgccUGGCagcagCCGAGGCCGAGUu -3'
miRNA:   3'- -GCuCGUGau---GCCGg----GGCUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 38648 0.68 0.318342
Target:  5'- -aGGCGCUGgcuuuCGGCacgaCCGAGGCUAcguccAGCg -3'
miRNA:   3'- gcUCGUGAU-----GCCGg---GGCUCCGGU-----UCG- -5'
26461 5' -59.3 NC_005357.1 + 42043 0.68 0.326161
Target:  5'- --cGCGCgcUGGCCgCGcucaaucggcAGGCCAAGCa -3'
miRNA:   3'- gcuCGUGauGCCGGgGC----------UCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 29076 0.68 0.326161
Target:  5'- gCGGGuCAUccuCGGgCgCCGAGGUCAGGCc -3'
miRNA:   3'- -GCUC-GUGau-GCCgG-GGCUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 32701 0.68 0.332519
Target:  5'- aCGAGCAgUucgcccGCGGCUUCGAGGCguaucucuucgaGGGCa -3'
miRNA:   3'- -GCUCGUgA------UGCCGGGGCUCCGg-----------UUCG- -5'
26461 5' -59.3 NC_005357.1 + 23869 0.68 0.33332
Target:  5'- gCGAGC---GCGGCCuccaCCGAcgugaucgacuucGGCCAGGCc -3'
miRNA:   3'- -GCUCGugaUGCCGG----GGCU-------------CCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 31237 0.68 0.334123
Target:  5'- -cGGCGC-GCGGCCCagcuaCGAG-CCGGGCg -3'
miRNA:   3'- gcUCGUGaUGCCGGG-----GCUCcGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 7386 0.68 0.341408
Target:  5'- gCGGGCACcGCGGCgaccuuccaccagCuuGAaGCCGGGCa -3'
miRNA:   3'- -GCUCGUGaUGCCG-------------GggCUcCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 26701 0.68 0.342225
Target:  5'- uCGAGCGC-AUGGCCUCGc-GCCAguucgaugcccaGGCg -3'
miRNA:   3'- -GCUCGUGaUGCCGGGGCucCGGU------------UCG- -5'
26461 5' -59.3 NC_005357.1 + 34021 0.68 0.342225
Target:  5'- -aAGCGC-ACGGCCCUGGccgacuGGCUAcGCa -3'
miRNA:   3'- gcUCGUGaUGCCGGGGCU------CCGGUuCG- -5'
26461 5' -59.3 NC_005357.1 + 1462 0.67 0.350468
Target:  5'- -cGGCGCggucgGCGGCCUCcuggcAGGCCGGGg -3'
miRNA:   3'- gcUCGUGa----UGCCGGGGc----UCCGGUUCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.