miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26461 5' -59.3 NC_005357.1 + 10894 0.67 0.384833
Target:  5'- cCGAgGCGCUguuuccACGGCaacacagCGAGGCCcAGCa -3'
miRNA:   3'- -GCU-CGUGA------UGCCGgg-----GCUCCGGuUCG- -5'
26461 5' -59.3 NC_005357.1 + 10532 0.67 0.384833
Target:  5'- -aGGCACU-CGGCCUCGAuGGCgGAa- -3'
miRNA:   3'- gcUCGUGAuGCCGGGGCU-CCGgUUcg -5'
26461 5' -59.3 NC_005357.1 + 7276 0.67 0.376036
Target:  5'- ----uGCUGCuuGGCCUCGGGGCCGuAGUg -3'
miRNA:   3'- gcucgUGAUG--CCGGGGCUCCGGU-UCG- -5'
26461 5' -59.3 NC_005357.1 + 12883 0.67 0.370823
Target:  5'- cCGAGCACggcguggguguccucUGCGGCCagGGGGCacAGCc -3'
miRNA:   3'- -GCUCGUG---------------AUGCCGGggCUCCGguUCG- -5'
26461 5' -59.3 NC_005357.1 + 12436 0.67 0.367375
Target:  5'- gGAGCACgAUGGCCCguuCGAcGGCugcaucCAGGCc -3'
miRNA:   3'- gCUCGUGaUGCCGGG---GCU-CCG------GUUCG- -5'
26461 5' -59.3 NC_005357.1 + 22279 0.67 0.358852
Target:  5'- cCGAGCAaUACgaauuccaGGcCCCCGAaGGCguGGCa -3'
miRNA:   3'- -GCUCGUgAUG--------CC-GGGGCU-CCGguUCG- -5'
26461 5' -59.3 NC_005357.1 + 21316 0.67 0.358852
Target:  5'- uCGAGCACUuCGGgCuuGAugccGGCCAccGCg -3'
miRNA:   3'- -GCUCGUGAuGCCgGggCU----CCGGUu-CG- -5'
26461 5' -59.3 NC_005357.1 + 37124 0.67 0.358007
Target:  5'- -cGGC-CUACGGCCUCGAccuGCCAgacaugcAGCa -3'
miRNA:   3'- gcUCGuGAUGCCGGGGCUc--CGGU-------UCG- -5'
26461 5' -59.3 NC_005357.1 + 1462 0.67 0.350468
Target:  5'- -cGGCGCggucgGCGGCCUCcuggcAGGCCGGGg -3'
miRNA:   3'- gcUCGUGa----UGCCGGGGc----UCCGGUUCg -5'
26461 5' -59.3 NC_005357.1 + 34021 0.68 0.342225
Target:  5'- -aAGCGC-ACGGCCCUGGccgacuGGCUAcGCa -3'
miRNA:   3'- gcUCGUGaUGCCGGGGCU------CCGGUuCG- -5'
26461 5' -59.3 NC_005357.1 + 26701 0.68 0.342225
Target:  5'- uCGAGCGC-AUGGCCUCGc-GCCAguucgaugcccaGGCg -3'
miRNA:   3'- -GCUCGUGaUGCCGGGGCucCGGU------------UCG- -5'
26461 5' -59.3 NC_005357.1 + 7386 0.68 0.341408
Target:  5'- gCGGGCACcGCGGCgaccuuccaccagCuuGAaGCCGGGCa -3'
miRNA:   3'- -GCUCGUGaUGCCG-------------GggCUcCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 31237 0.68 0.334123
Target:  5'- -cGGCGC-GCGGCCCagcuaCGAG-CCGGGCg -3'
miRNA:   3'- gcUCGUGaUGCCGGG-----GCUCcGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 23869 0.68 0.33332
Target:  5'- gCGAGC---GCGGCCuccaCCGAcgugaucgacuucGGCCAGGCc -3'
miRNA:   3'- -GCUCGugaUGCCGG----GGCU-------------CCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 32701 0.68 0.332519
Target:  5'- aCGAGCAgUucgcccGCGGCUUCGAGGCguaucucuucgaGGGCa -3'
miRNA:   3'- -GCUCGUgA------UGCCGGGGCUCCGg-----------UUCG- -5'
26461 5' -59.3 NC_005357.1 + 29076 0.68 0.326161
Target:  5'- gCGGGuCAUccuCGGgCgCCGAGGUCAGGCc -3'
miRNA:   3'- -GCUC-GUGau-GCCgG-GGCUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 42043 0.68 0.326161
Target:  5'- --cGCGCgcUGGCCgCGcucaaucggcAGGCCAAGCa -3'
miRNA:   3'- gcuCGUGauGCCGGgGC----------UCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 12665 0.68 0.318342
Target:  5'- uCGcGCACgcgccUGGCagcagCCGAGGCCGAGUu -3'
miRNA:   3'- -GCuCGUGau---GCCGg----GGCUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 1314 0.68 0.318342
Target:  5'- aGGGCG--ACGGCCaCC-AGGCCGacaAGCg -3'
miRNA:   3'- gCUCGUgaUGCCGG-GGcUCCGGU---UCG- -5'
26461 5' -59.3 NC_005357.1 + 38648 0.68 0.318342
Target:  5'- -aGGCGCUGgcuuuCGGCacgaCCGAGGCUAcguccAGCg -3'
miRNA:   3'- gcUCGUGAU-----GCCGg---GGCUCCGGU-----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.