Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26461 | 5' | -59.3 | NC_005357.1 | + | 11268 | 0.72 | 0.175636 |
Target: 5'- --uGCGCUGCGGCgCUGGgacgcucGGCCAGGUa -3' miRNA: 3'- gcuCGUGAUGCCGgGGCU-------CCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 36074 | 0.71 | 0.195971 |
Target: 5'- -cAGCGCccCGGCCUUcGGGCCGGGCg -3' miRNA: 3'- gcUCGUGauGCCGGGGcUCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 31912 | 0.71 | 0.212128 |
Target: 5'- cCGAGUGcCUGCGGCguUUCGAGGCCu-GCu -3' miRNA: 3'- -GCUCGU-GAUGCCG--GGGCUCCGGuuCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 35372 | 0.7 | 0.229417 |
Target: 5'- aCGA-CGCUGCcG-CCCGAGGCCAuGCg -3' miRNA: 3'- -GCUcGUGAUGcCgGGGCUCCGGUuCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 32354 | 0.69 | 0.26756 |
Target: 5'- aGGuCGCUGCGGUCgccgCCGAGGCCccGGCc -3' miRNA: 3'- gCUcGUGAUGCCGG----GGCUCCGGu-UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 34067 | 0.69 | 0.281367 |
Target: 5'- uCGAGCGCgGCGGCgCagGAGGUacuGGCa -3' miRNA: 3'- -GCUCGUGaUGCCGgGg-CUCCGgu-UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 1314 | 0.68 | 0.318342 |
Target: 5'- aGGGCG--ACGGCCaCC-AGGCCGacaAGCg -3' miRNA: 3'- gCUCGUgaUGCCGG-GGcUCCGGU---UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 29076 | 0.68 | 0.326161 |
Target: 5'- gCGGGuCAUccuCGGgCgCCGAGGUCAGGCc -3' miRNA: 3'- -GCUC-GUGau-GCCgG-GGCUCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 23728 | 0.7 | 0.223526 |
Target: 5'- cCGAuGCGCUGCuGCUgaCCGAGGCCc-GCg -3' miRNA: 3'- -GCU-CGUGAUGcCGG--GGCUCCGGuuCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 19196 | 0.7 | 0.229417 |
Target: 5'- gCGAgGCGCgguCGGUggCCGAGGCCGAGg -3' miRNA: 3'- -GCU-CGUGau-GCCGg-GGCUCCGGUUCg -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 10341 | 0.7 | 0.23544 |
Target: 5'- uGAGCAacGCGGCCguguuggCGGGGCCGaugAGCa -3' miRNA: 3'- gCUCGUgaUGCCGGg------GCUCCGGU---UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 33856 | 0.7 | 0.247247 |
Target: 5'- --cGCACgcGCGGCCUacgacgcccaggaUGAGGUCGAGCg -3' miRNA: 3'- gcuCGUGa-UGCCGGG-------------GCUCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 31278 | 0.7 | 0.254305 |
Target: 5'- aCGuGCGCagGCGGCCCagcaGcAGGCCGAacuGCu -3' miRNA: 3'- -GCuCGUGa-UGCCGGGg---C-UCCGGUU---CG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 7138 | 0.71 | 0.211572 |
Target: 5'- gCGaAGUcgucgGCUGCGGCCUgGAugaccagGGCCGGGCg -3' miRNA: 3'- -GC-UCG-----UGAUGCCGGGgCU-------CCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 30828 | 0.72 | 0.171431 |
Target: 5'- -uGGCACUGCuGCCCgGcGGCCAgccGGCg -3' miRNA: 3'- gcUCGUGAUGcCGGGgCuCCGGU---UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 27500 | 0.74 | 0.137853 |
Target: 5'- uGGGCGCgcaguCGGCaCuuGAGGCCGgccAGCa -3' miRNA: 3'- gCUCGUGau---GCCG-GggCUCCGGU---UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 9561 | 0.75 | 0.110411 |
Target: 5'- uCGGGCGCgacaaucuCGGCgCCGAccgucugcGGCCAGGCg -3' miRNA: 3'- -GCUCGUGau------GCCGgGGCU--------CCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 14995 | 0.79 | 0.055795 |
Target: 5'- aGGGC-CUGCGGCCgCCGGGcgcggugcGCCAGGCg -3' miRNA: 3'- gCUCGuGAUGCCGG-GGCUC--------CGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 1960 | 0.8 | 0.045576 |
Target: 5'- uCGAGCGC-GCGGCCCUGGGGgaAGGCa -3' miRNA: 3'- -GCUCGUGaUGCCGGGGCUCCggUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 27054 | 0.66 | 0.440384 |
Target: 5'- --cGCACgcggACGcGCUcaCCGAGGUgAAGCa -3' miRNA: 3'- gcuCGUGa---UGC-CGG--GGCUCCGgUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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