miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26461 5' -59.3 NC_005357.1 + 14083 0.66 0.41203
Target:  5'- --cGCGC-GCuGCCCgaCGAGGCCAAGg -3'
miRNA:   3'- gcuCGUGaUGcCGGG--GCUCCGGUUCg -5'
26461 5' -59.3 NC_005357.1 + 14995 0.79 0.055795
Target:  5'- aGGGC-CUGCGGCCgCCGGGcgcggugcGCCAGGCg -3'
miRNA:   3'- gCUCGuGAUGCCGG-GGCUC--------CGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 15584 0.66 0.440384
Target:  5'- aCGAcGCGCUGCGGaugcaCCgCGccaucGGCCAGGa -3'
miRNA:   3'- -GCU-CGUGAUGCCg----GG-GCu----CCGGUUCg -5'
26461 5' -59.3 NC_005357.1 + 15960 0.66 0.402832
Target:  5'- cCGAauGCcaACUgACGGaUgCCGAGGUCGAGCg -3'
miRNA:   3'- -GCU--CG--UGA-UGCC-GgGGCUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 16574 0.66 0.440384
Target:  5'- uGuAGCGCgACGcGCCggaCGAGGCCGAccacGCg -3'
miRNA:   3'- gC-UCGUGaUGC-CGGg--GCUCCGGUU----CG- -5'
26461 5' -59.3 NC_005357.1 + 17436 0.73 0.145634
Target:  5'- uGAGCAg--UGGCCCCgccagcaucGAGGCCAGGUg -3'
miRNA:   3'- gCUCGUgauGCCGGGG---------CUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 18694 0.69 0.26756
Target:  5'- -uGGCGCUgcuGCGcGCCaCCGAGGCacuGGCc -3'
miRNA:   3'- gcUCGUGA---UGC-CGG-GGCUCCGgu-UCG- -5'
26461 5' -59.3 NC_005357.1 + 19196 0.7 0.229417
Target:  5'- gCGAgGCGCgguCGGUggCCGAGGCCGAGg -3'
miRNA:   3'- -GCU-CGUGau-GCCGg-GGCUCCGGUUCg -5'
26461 5' -59.3 NC_005357.1 + 21181 0.66 0.430809
Target:  5'- uGGGCAU--CGaCCCCGAGuugaucguGCCGGGCa -3'
miRNA:   3'- gCUCGUGauGCcGGGGCUC--------CGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 21316 0.67 0.358852
Target:  5'- uCGAGCACUuCGGgCuuGAugccGGCCAccGCg -3'
miRNA:   3'- -GCUCGUGAuGCCgGggCU----CCGGUu-CG- -5'
26461 5' -59.3 NC_005357.1 + 22196 0.67 0.384833
Target:  5'- gGAGCAa---GGCaCCCaAGGCCAacAGCc -3'
miRNA:   3'- gCUCGUgaugCCG-GGGcUCCGGU--UCG- -5'
26461 5' -59.3 NC_005357.1 + 22279 0.67 0.358852
Target:  5'- cCGAGCAaUACgaauuccaGGcCCCCGAaGGCguGGCa -3'
miRNA:   3'- -GCUCGUgAUG--------CC-GGGGCU-CCGguUCG- -5'
26461 5' -59.3 NC_005357.1 + 23728 0.7 0.223526
Target:  5'- cCGAuGCGCUGCuGCUgaCCGAGGCCc-GCg -3'
miRNA:   3'- -GCU-CGUGAUGcCGG--GGCUCCGGuuCG- -5'
26461 5' -59.3 NC_005357.1 + 23869 0.68 0.33332
Target:  5'- gCGAGC---GCGGCCuccaCCGAcgugaucgacuucGGCCAGGCc -3'
miRNA:   3'- -GCUCGugaUGCCGG----GGCU-------------CCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 26701 0.68 0.342225
Target:  5'- uCGAGCGC-AUGGCCUCGc-GCCAguucgaugcccaGGCg -3'
miRNA:   3'- -GCUCGUGaUGCCGGGGCucCGGU------------UCG- -5'
26461 5' -59.3 NC_005357.1 + 27054 0.66 0.440384
Target:  5'- --cGCACgcggACGcGCUcaCCGAGGUgAAGCa -3'
miRNA:   3'- gcuCGUGa---UGC-CGG--GGCUCCGgUUCG- -5'
26461 5' -59.3 NC_005357.1 + 27500 0.74 0.137853
Target:  5'- uGGGCGCgcaguCGGCaCuuGAGGCCGgccAGCa -3'
miRNA:   3'- gCUCGUGau---GCCG-GggCUCCGGU---UCG- -5'
26461 5' -59.3 NC_005357.1 + 27725 0.67 0.393766
Target:  5'- aGGGCAUggaGGCgcaaCUGcAGGCCGGGCu -3'
miRNA:   3'- gCUCGUGaugCCGg---GGC-UCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 29076 0.68 0.326161
Target:  5'- gCGGGuCAUccuCGGgCgCCGAGGUCAGGCc -3'
miRNA:   3'- -GCUC-GUGau-GCCgG-GGCUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 29679 0.69 0.282072
Target:  5'- gGAGCGCgccaagcgucugggcGCGGCaCCCagcaccaacGGGCCGGGCg -3'
miRNA:   3'- gCUCGUGa--------------UGCCG-GGGc--------UCCGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.