miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26461 5' -59.3 NC_005357.1 + 1314 0.68 0.318342
Target:  5'- aGGGCG--ACGGCCaCC-AGGCCGacaAGCg -3'
miRNA:   3'- gCUCGUgaUGCCGG-GGcUCCGGU---UCG- -5'
26461 5' -59.3 NC_005357.1 + 1462 0.67 0.350468
Target:  5'- -cGGCGCggucgGCGGCCUCcuggcAGGCCGGGg -3'
miRNA:   3'- gcUCGUGa----UGCCGGGGc----UCCGGUUCg -5'
26461 5' -59.3 NC_005357.1 + 1960 0.8 0.045576
Target:  5'- uCGAGCGC-GCGGCCCUGGGGgaAGGCa -3'
miRNA:   3'- -GCUCGUGaUGCCGGGGCUCCggUUCG- -5'
26461 5' -59.3 NC_005357.1 + 4883 0.67 0.393766
Target:  5'- -cAGCGCggcgacgGCGGCCUCGuuuucGGCCAcGGUg -3'
miRNA:   3'- gcUCGUGa------UGCCGGGGCu----CCGGU-UCG- -5'
26461 5' -59.3 NC_005357.1 + 7138 0.71 0.211572
Target:  5'- gCGaAGUcgucgGCUGCGGCCUgGAugaccagGGCCGGGCg -3'
miRNA:   3'- -GC-UCG-----UGAUGCCGGGgCU-------CCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 7276 0.67 0.376036
Target:  5'- ----uGCUGCuuGGCCUCGGGGCCGuAGUg -3'
miRNA:   3'- gcucgUGAUG--CCGGGGCUCCGGU-UCG- -5'
26461 5' -59.3 NC_005357.1 + 7386 0.68 0.341408
Target:  5'- gCGGGCACcGCGGCgaccuuccaccagCuuGAaGCCGGGCa -3'
miRNA:   3'- -GCUCGUGaUGCCG-------------GggCUcCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 8269 0.69 0.281367
Target:  5'- cCGGGCAUU-CGGCuUCCaGGGCCAcGCu -3'
miRNA:   3'- -GCUCGUGAuGCCG-GGGcUCCGGUuCG- -5'
26461 5' -59.3 NC_005357.1 + 8422 0.74 0.120045
Target:  5'- cCGuGCGCUugucuACGGCCuuGAGGCUuuGGCc -3'
miRNA:   3'- -GCuCGUGA-----UGCCGGggCUCCGGu-UCG- -5'
26461 5' -59.3 NC_005357.1 + 9526 0.73 0.149673
Target:  5'- -uGGCaucauGCUGCGGCCCUGuucGGCCAGuGCg -3'
miRNA:   3'- gcUCG-----UGAUGCCGGGGCu--CCGGUU-CG- -5'
26461 5' -59.3 NC_005357.1 + 9561 0.75 0.110411
Target:  5'- uCGGGCGCgacaaucuCGGCgCCGAccgucugcGGCCAGGCg -3'
miRNA:   3'- -GCUCGUGau------GCCGgGGCU--------CCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 10341 0.7 0.23544
Target:  5'- uGAGCAacGCGGCCguguuggCGGGGCCGaugAGCa -3'
miRNA:   3'- gCUCGUgaUGCCGGg------GCUCCGGU---UCG- -5'
26461 5' -59.3 NC_005357.1 + 10532 0.67 0.384833
Target:  5'- -aGGCACU-CGGCCUCGAuGGCgGAa- -3'
miRNA:   3'- gcUCGUGAuGCCGGGGCU-CCGgUUcg -5'
26461 5' -59.3 NC_005357.1 + 10894 0.67 0.384833
Target:  5'- cCGAgGCGCUguuuccACGGCaacacagCGAGGCCcAGCa -3'
miRNA:   3'- -GCU-CGUGA------UGCCGgg-----GCUCCGGuUCG- -5'
26461 5' -59.3 NC_005357.1 + 10969 0.66 0.430809
Target:  5'- gGGGaCACUG-GGCCaCCuGuucGGCCAGGCc -3'
miRNA:   3'- gCUC-GUGAUgCCGG-GG-Cu--CCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 11268 0.72 0.175636
Target:  5'- --uGCGCUGCGGCgCUGGgacgcucGGCCAGGUa -3'
miRNA:   3'- gcuCGUGAUGCCGgGGCU-------CCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 11325 0.66 0.45008
Target:  5'- uCGGGCAgaACGGCCCauucguucAGGUCuuGCa -3'
miRNA:   3'- -GCUCGUgaUGCCGGGgc------UCCGGuuCG- -5'
26461 5' -59.3 NC_005357.1 + 12436 0.67 0.367375
Target:  5'- gGAGCACgAUGGCCCguuCGAcGGCugcaucCAGGCc -3'
miRNA:   3'- gCUCGUGaUGCCGGG---GCU-CCG------GUUCG- -5'
26461 5' -59.3 NC_005357.1 + 12665 0.68 0.318342
Target:  5'- uCGcGCACgcgccUGGCagcagCCGAGGCCGAGUu -3'
miRNA:   3'- -GCuCGUGau---GCCGg----GGCUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 12883 0.67 0.370823
Target:  5'- cCGAGCACggcguggguguccucUGCGGCCagGGGGCacAGCc -3'
miRNA:   3'- -GCUCGUG---------------AUGCCGGggCUCCGguUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.