Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26461 | 5' | -59.3 | NC_005357.1 | + | 42043 | 0.68 | 0.326161 |
Target: 5'- --cGCGCgcUGGCCgCGcucaaucggcAGGCCAAGCa -3' miRNA: 3'- gcuCGUGauGCCGGgGC----------UCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 41427 | 0.68 | 0.310664 |
Target: 5'- uCGA-CGCUGCGGUgaaCCaCGGcaccGGCCAGGCg -3' miRNA: 3'- -GCUcGUGAUGCCG---GG-GCU----CCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 41109 | 0.66 | 0.430809 |
Target: 5'- --cGCGCUuguCGGCCUgGuGGCCGucgcccugGGCg -3' miRNA: 3'- gcuCGUGAu--GCCGGGgCuCCGGU--------UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 40945 | 0.66 | 0.421356 |
Target: 5'- -cAGCACUGCGauaCCCCGGccuGCCAGGa -3' miRNA: 3'- gcUCGUGAUGCc--GGGGCUc--CGGUUCg -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 38648 | 0.68 | 0.318342 |
Target: 5'- -aGGCGCUGgcuuuCGGCacgaCCGAGGCUAcguccAGCg -3' miRNA: 3'- gcUCGUGAU-----GCCGg---GGCUCCGGU-----UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 37124 | 0.67 | 0.358007 |
Target: 5'- -cGGC-CUACGGCCUCGAccuGCCAgacaugcAGCa -3' miRNA: 3'- gcUCGuGAUGCCGGGGCUc--CGGU-------UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 36859 | 0.66 | 0.45008 |
Target: 5'- gGAGUAUgcCGGCCUCGAcaucgaaGCCAuGCg -3' miRNA: 3'- gCUCGUGauGCCGGGGCUc------CGGUuCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 36074 | 0.71 | 0.195971 |
Target: 5'- -cAGCGCccCGGCCUUcGGGCCGGGCg -3' miRNA: 3'- gcUCGUGauGCCGGGGcUCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 35372 | 0.7 | 0.229417 |
Target: 5'- aCGA-CGCUGCcG-CCCGAGGCCAuGCg -3' miRNA: 3'- -GCUcGUGAUGcCgGGGCUCCGGUuCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 35271 | 0.66 | 0.420418 |
Target: 5'- -aAGCGCc-CGGCCCUGgucauccAGGCCGcAGCc -3' miRNA: 3'- gcUCGUGauGCCGGGGC-------UCCGGU-UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 35146 | 1.12 | 0.000182 |
Target: 5'- gCGAGCACUACGGCCCCGAGGCCAAGCa -3' miRNA: 3'- -GCUCGUGAUGCCGGGGCUCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 34734 | 0.76 | 0.098691 |
Target: 5'- -cGGCAagcCGGCCgCCGAGGUCAAGCc -3' miRNA: 3'- gcUCGUgauGCCGG-GGCUCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 34445 | 0.7 | 0.254955 |
Target: 5'- aCGAGCGCggcgacauggaaaccACGaugcGCgCCGAGGCCAcgGGCa -3' miRNA: 3'- -GCUCGUGa--------------UGC----CGgGGCUCCGGU--UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 34067 | 0.69 | 0.281367 |
Target: 5'- uCGAGCGCgGCGGCgCagGAGGUacuGGCa -3' miRNA: 3'- -GCUCGUGaUGCCGgGg-CUCCGgu-UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 34021 | 0.68 | 0.342225 |
Target: 5'- -aAGCGC-ACGGCCCUGGccgacuGGCUAcGCa -3' miRNA: 3'- gcUCGUGaUGCCGGGGCU------CCGGUuCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 33856 | 0.7 | 0.247247 |
Target: 5'- --cGCACgcGCGGCCUacgacgcccaggaUGAGGUCGAGCg -3' miRNA: 3'- gcuCGUGa-UGCCGGG-------------GCUCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 33784 | 0.66 | 0.440384 |
Target: 5'- gCGAGUACggcGCGGCCuggggcguuuCCGAagggcguaccGGCCAcGCc -3' miRNA: 3'- -GCUCGUGa--UGCCGG----------GGCU----------CCGGUuCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 33337 | 0.66 | 0.430809 |
Target: 5'- -cGGCAagaACGGCCUCGcGGCCA-GUg -3' miRNA: 3'- gcUCGUga-UGCCGGGGCuCCGGUuCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 33185 | 0.66 | 0.440384 |
Target: 5'- uGGGCGCccucggcACGGCCaCCGcuGGCUAucgcGGCa -3' miRNA: 3'- gCUCGUGa------UGCCGG-GGCu-CCGGU----UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 32701 | 0.68 | 0.332519 |
Target: 5'- aCGAGCAgUucgcccGCGGCUUCGAGGCguaucucuucgaGGGCa -3' miRNA: 3'- -GCUCGUgA------UGCCGGGGCUCCGg-----------UUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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