Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26461 | 5' | -59.3 | NC_005357.1 | + | 22196 | 0.67 | 0.384833 |
Target: 5'- gGAGCAa---GGCaCCCaAGGCCAacAGCc -3' miRNA: 3'- gCUCGUgaugCCG-GGGcUCCGGU--UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 12436 | 0.67 | 0.367375 |
Target: 5'- gGAGCACgAUGGCCCguuCGAcGGCugcaucCAGGCc -3' miRNA: 3'- gCUCGUGaUGCCGGG---GCU-CCG------GUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 1462 | 0.67 | 0.350468 |
Target: 5'- -cGGCGCggucgGCGGCCUCcuggcAGGCCGGGg -3' miRNA: 3'- gcUCGUGa----UGCCGGGGc----UCCGGUUCg -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 10894 | 0.67 | 0.384833 |
Target: 5'- cCGAgGCGCUguuuccACGGCaacacagCGAGGCCcAGCa -3' miRNA: 3'- -GCU-CGUGA------UGCCGgg-----GCUCCGGuUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 10532 | 0.67 | 0.384833 |
Target: 5'- -aGGCACU-CGGCCUCGAuGGCgGAa- -3' miRNA: 3'- gcUCGUGAuGCCGGGGCU-CCGgUUcg -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 4883 | 0.67 | 0.393766 |
Target: 5'- -cAGCGCggcgacgGCGGCCUCGuuuucGGCCAcGGUg -3' miRNA: 3'- gcUCGUGa------UGCCGGGGCu----CCGGU-UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 37124 | 0.67 | 0.358007 |
Target: 5'- -cGGC-CUACGGCCUCGAccuGCCAgacaugcAGCa -3' miRNA: 3'- gcUCGuGAUGCCGGGGCUc--CGGU-------UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 21316 | 0.67 | 0.358852 |
Target: 5'- uCGAGCACUuCGGgCuuGAugccGGCCAccGCg -3' miRNA: 3'- -GCUCGUGAuGCCgGggCU----CCGGUu-CG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 7276 | 0.67 | 0.376036 |
Target: 5'- ----uGCUGCuuGGCCUCGGGGCCGuAGUg -3' miRNA: 3'- gcucgUGAUG--CCGGGGCUCCGGU-UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 41427 | 0.68 | 0.310664 |
Target: 5'- uCGA-CGCUGCGGUgaaCCaCGGcaccGGCCAGGCg -3' miRNA: 3'- -GCUcGUGAUGCCG---GG-GCU----CCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 42043 | 0.68 | 0.326161 |
Target: 5'- --cGCGCgcUGGCCgCGcucaaucggcAGGCCAAGCa -3' miRNA: 3'- gcuCGUGauGCCGGgGC----------UCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 38648 | 0.68 | 0.318342 |
Target: 5'- -aGGCGCUGgcuuuCGGCacgaCCGAGGCUAcguccAGCg -3' miRNA: 3'- gcUCGUGAU-----GCCGg---GGCUCCGGU-----UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 23869 | 0.68 | 0.33332 |
Target: 5'- gCGAGC---GCGGCCuccaCCGAcgugaucgacuucGGCCAGGCc -3' miRNA: 3'- -GCUCGugaUGCCGG----GGCU-------------CCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 34021 | 0.68 | 0.342225 |
Target: 5'- -aAGCGC-ACGGCCCUGGccgacuGGCUAcGCa -3' miRNA: 3'- gcUCGUGaUGCCGGGGCU------CCGGUuCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 32701 | 0.68 | 0.332519 |
Target: 5'- aCGAGCAgUucgcccGCGGCUUCGAGGCguaucucuucgaGGGCa -3' miRNA: 3'- -GCUCGUgA------UGCCGGGGCUCCGg-----------UUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 12665 | 0.68 | 0.318342 |
Target: 5'- uCGcGCACgcgccUGGCagcagCCGAGGCCGAGUu -3' miRNA: 3'- -GCuCGUGau---GCCGg----GGCUCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 7386 | 0.68 | 0.341408 |
Target: 5'- gCGGGCACcGCGGCgaccuuccaccagCuuGAaGCCGGGCa -3' miRNA: 3'- -GCUCGUGaUGCCG-------------GggCUcCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 26701 | 0.68 | 0.342225 |
Target: 5'- uCGAGCGC-AUGGCCUCGc-GCCAguucgaugcccaGGCg -3' miRNA: 3'- -GCUCGUGaUGCCGGGGCucCGGU------------UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 29076 | 0.68 | 0.326161 |
Target: 5'- gCGGGuCAUccuCGGgCgCCGAGGUCAGGCc -3' miRNA: 3'- -GCUC-GUGau-GCCgG-GGCUCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 1314 | 0.68 | 0.318342 |
Target: 5'- aGGGCG--ACGGCCaCC-AGGCCGacaAGCg -3' miRNA: 3'- gCUCGUgaUGCCGG-GGcUCCGGU---UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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