miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26461 5' -59.3 NC_005357.1 + 41427 0.68 0.310664
Target:  5'- uCGA-CGCUGCGGUgaaCCaCGGcaccGGCCAGGCg -3'
miRNA:   3'- -GCUcGUGAUGCCG---GG-GCU----CCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 29679 0.69 0.282072
Target:  5'- gGAGCGCgccaagcgucugggcGCGGCaCCCagcaccaacGGGCCGGGCg -3'
miRNA:   3'- gCUCGUGa--------------UGCCG-GGGc--------UCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 8269 0.69 0.281367
Target:  5'- cCGGGCAUU-CGGCuUCCaGGGCCAcGCu -3'
miRNA:   3'- -GCUCGUGAuGCCG-GGGcUCCGGUuCG- -5'
26461 5' -59.3 NC_005357.1 + 34067 0.69 0.281367
Target:  5'- uCGAGCGCgGCGGCgCagGAGGUacuGGCa -3'
miRNA:   3'- -GCUCGUGaUGCCGgGg-CUCCGgu-UCG- -5'
26461 5' -59.3 NC_005357.1 + 18694 0.69 0.26756
Target:  5'- -uGGCGCUgcuGCGcGCCaCCGAGGCacuGGCc -3'
miRNA:   3'- gcUCGUGA---UGC-CGG-GGCUCCGgu-UCG- -5'
26461 5' -59.3 NC_005357.1 + 32354 0.69 0.26756
Target:  5'- aGGuCGCUGCGGUCgccgCCGAGGCCccGGCc -3'
miRNA:   3'- gCUcGUGAUGCCGG----GGCUCCGGu-UCG- -5'
26461 5' -59.3 NC_005357.1 + 34445 0.7 0.254955
Target:  5'- aCGAGCGCggcgacauggaaaccACGaugcGCgCCGAGGCCAcgGGCa -3'
miRNA:   3'- -GCUCGUGa--------------UGC----CGgGGCUCCGGU--UCG- -5'
26461 5' -59.3 NC_005357.1 + 31278 0.7 0.254305
Target:  5'- aCGuGCGCagGCGGCCCagcaGcAGGCCGAacuGCu -3'
miRNA:   3'- -GCuCGUGa-UGCCGGGg---C-UCCGGUU---CG- -5'
26461 5' -59.3 NC_005357.1 + 33856 0.7 0.247247
Target:  5'- --cGCACgcGCGGCCUacgacgcccaggaUGAGGUCGAGCg -3'
miRNA:   3'- gcuCGUGa-UGCCGGG-------------GCUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 10341 0.7 0.23544
Target:  5'- uGAGCAacGCGGCCguguuggCGGGGCCGaugAGCa -3'
miRNA:   3'- gCUCGUgaUGCCGGg------GCUCCGGU---UCG- -5'
26461 5' -59.3 NC_005357.1 + 35372 0.7 0.229417
Target:  5'- aCGA-CGCUGCcG-CCCGAGGCCAuGCg -3'
miRNA:   3'- -GCUcGUGAUGcCgGGGCUCCGGUuCG- -5'
26461 5' -59.3 NC_005357.1 + 19196 0.7 0.229417
Target:  5'- gCGAgGCGCgguCGGUggCCGAGGCCGAGg -3'
miRNA:   3'- -GCU-CGUGau-GCCGg-GGCUCCGGUUCg -5'
26461 5' -59.3 NC_005357.1 + 23728 0.7 0.223526
Target:  5'- cCGAuGCGCUGCuGCUgaCCGAGGCCc-GCg -3'
miRNA:   3'- -GCU-CGUGAUGcCGG--GGCUCCGGuuCG- -5'
26461 5' -59.3 NC_005357.1 + 31912 0.71 0.212128
Target:  5'- cCGAGUGcCUGCGGCguUUCGAGGCCu-GCu -3'
miRNA:   3'- -GCUCGU-GAUGCCG--GGGCUCCGGuuCG- -5'
26461 5' -59.3 NC_005357.1 + 7138 0.71 0.211572
Target:  5'- gCGaAGUcgucgGCUGCGGCCUgGAugaccagGGCCGGGCg -3'
miRNA:   3'- -GC-UCG-----UGAUGCCGGGgCU-------CCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 36074 0.71 0.195971
Target:  5'- -cAGCGCccCGGCCUUcGGGCCGGGCg -3'
miRNA:   3'- gcUCGUGauGCCGGGGcUCCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 11268 0.72 0.175636
Target:  5'- --uGCGCUGCGGCgCUGGgacgcucGGCCAGGUa -3'
miRNA:   3'- gcuCGUGAUGCCGgGGCU-------CCGGUUCG- -5'
26461 5' -59.3 NC_005357.1 + 30828 0.72 0.171431
Target:  5'- -uGGCACUGCuGCCCgGcGGCCAgccGGCg -3'
miRNA:   3'- gcUCGUGAUGcCGGGgCuCCGGU---UCG- -5'
26461 5' -59.3 NC_005357.1 + 9526 0.73 0.149673
Target:  5'- -uGGCaucauGCUGCGGCCCUGuucGGCCAGuGCg -3'
miRNA:   3'- gcUCG-----UGAUGCCGGGGCu--CCGGUU-CG- -5'
26461 5' -59.3 NC_005357.1 + 17436 0.73 0.145634
Target:  5'- uGAGCAg--UGGCCCCgccagcaucGAGGCCAGGUg -3'
miRNA:   3'- gCUCGUgauGCCGGGG---------CUCCGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.