Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26461 | 5' | -59.3 | NC_005357.1 | + | 35146 | 1.12 | 0.000182 |
Target: 5'- gCGAGCACUACGGCCCCGAGGCCAAGCa -3' miRNA: 3'- -GCUCGUGAUGCCGGGGCUCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 38648 | 0.68 | 0.318342 |
Target: 5'- -aGGCGCUGgcuuuCGGCacgaCCGAGGCUAcguccAGCg -3' miRNA: 3'- gcUCGUGAU-----GCCGg---GGCUCCGGU-----UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 32701 | 0.68 | 0.332519 |
Target: 5'- aCGAGCAgUucgcccGCGGCUUCGAGGCguaucucuucgaGGGCa -3' miRNA: 3'- -GCUCGUgA------UGCCGGGGCUCCGg-----------UUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 27054 | 0.66 | 0.440384 |
Target: 5'- --cGCACgcggACGcGCUcaCCGAGGUgAAGCa -3' miRNA: 3'- gcuCGUGa---UGC-CGG--GGCUCCGgUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 27500 | 0.74 | 0.137853 |
Target: 5'- uGGGCGCgcaguCGGCaCuuGAGGCCGgccAGCa -3' miRNA: 3'- gCUCGUGau---GCCG-GggCUCCGGU---UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 30828 | 0.72 | 0.171431 |
Target: 5'- -uGGCACUGCuGCCCgGcGGCCAgccGGCg -3' miRNA: 3'- gcUCGUGAUGcCGGGgCuCCGGU---UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 23728 | 0.7 | 0.223526 |
Target: 5'- cCGAuGCGCUGCuGCUgaCCGAGGCCc-GCg -3' miRNA: 3'- -GCU-CGUGAUGcCGG--GGCUCCGGuuCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 19196 | 0.7 | 0.229417 |
Target: 5'- gCGAgGCGCgguCGGUggCCGAGGCCGAGg -3' miRNA: 3'- -GCU-CGUGau-GCCGg-GGCUCCGGUUCg -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 31278 | 0.7 | 0.254305 |
Target: 5'- aCGuGCGCagGCGGCCCagcaGcAGGCCGAacuGCu -3' miRNA: 3'- -GCuCGUGa-UGCCGGGg---C-UCCGGUU---CG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 41427 | 0.68 | 0.310664 |
Target: 5'- uCGA-CGCUGCGGUgaaCCaCGGcaccGGCCAGGCg -3' miRNA: 3'- -GCUcGUGAUGCCG---GG-GCU----CCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 18694 | 0.69 | 0.26756 |
Target: 5'- -uGGCGCUgcuGCGcGCCaCCGAGGCacuGGCc -3' miRNA: 3'- gcUCGUGA---UGC-CGG-GGCUCCGgu-UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 33856 | 0.7 | 0.247247 |
Target: 5'- --cGCACgcGCGGCCUacgacgcccaggaUGAGGUCGAGCg -3' miRNA: 3'- gcuCGUGa-UGCCGGG-------------GCUCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 1960 | 0.8 | 0.045576 |
Target: 5'- uCGAGCGC-GCGGCCCUGGGGgaAGGCa -3' miRNA: 3'- -GCUCGUGaUGCCGGGGCUCCggUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 8269 | 0.69 | 0.281367 |
Target: 5'- cCGGGCAUU-CGGCuUCCaGGGCCAcGCu -3' miRNA: 3'- -GCUCGUGAuGCCG-GGGcUCCGGUuCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 14995 | 0.79 | 0.055795 |
Target: 5'- aGGGC-CUGCGGCCgCCGGGcgcggugcGCCAGGCg -3' miRNA: 3'- gCUCGuGAUGCCGG-GGCUC--------CGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 10341 | 0.7 | 0.23544 |
Target: 5'- uGAGCAacGCGGCCguguuggCGGGGCCGaugAGCa -3' miRNA: 3'- gCUCGUgaUGCCGGg------GCUCCGGU---UCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 29679 | 0.69 | 0.282072 |
Target: 5'- gGAGCGCgccaagcgucugggcGCGGCaCCCagcaccaacGGGCCGGGCg -3' miRNA: 3'- gCUCGUGa--------------UGCCG-GGGc--------UCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 12665 | 0.68 | 0.318342 |
Target: 5'- uCGcGCACgcgccUGGCagcagCCGAGGCCGAGUu -3' miRNA: 3'- -GCuCGUGau---GCCGg----GGCUCCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 9561 | 0.75 | 0.110411 |
Target: 5'- uCGGGCGCgacaaucuCGGCgCCGAccgucugcGGCCAGGCg -3' miRNA: 3'- -GCUCGUGau------GCCGgGGCU--------CCGGUUCG- -5' |
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26461 | 5' | -59.3 | NC_005357.1 | + | 7138 | 0.71 | 0.211572 |
Target: 5'- gCGaAGUcgucgGCUGCGGCCUgGAugaccagGGCCGGGCg -3' miRNA: 3'- -GC-UCG-----UGAUGCCGGGgCU-------CCGGUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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