miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26462 5' -57.7 NC_005357.1 + 13325 0.66 0.495818
Target:  5'- gGcGGCGUAGGCUuucGGCaGGUCGCCg -3'
miRNA:   3'- aCuUCGCGUUCGAcgaCUG-CCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 13750 0.73 0.169861
Target:  5'- cGAcguGGCGCGccGC-GCUGGCgaGGCCGCCg -3'
miRNA:   3'- aCU---UCGCGUu-CGaCGACUG--CCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 13867 0.68 0.361175
Target:  5'- cGAcguGCGCGccGCgaugGCcGGCGGCCGCa -3'
miRNA:   3'- aCUu--CGCGUu-CGa---CGaCUGCCGGCGg -5'
26462 5' -57.7 NC_005357.1 + 14047 0.66 0.48541
Target:  5'- aUGGAGCGCGaaAGCccgGCgcugGGCGucGuuGCCu -3'
miRNA:   3'- -ACUUCGCGU--UCGa--CGa---CUGC--CggCGG- -5'
26462 5' -57.7 NC_005357.1 + 14624 0.67 0.406315
Target:  5'- ---cGCGCGAGgacgUGCUG-CGGCUGCg -3'
miRNA:   3'- acuuCGCGUUCg---ACGACuGCCGGCGg -5'
26462 5' -57.7 NC_005357.1 + 14719 0.71 0.247603
Target:  5'- aUGAccGGCgGCGAGCcGCUGcCGGCgCGCg -3'
miRNA:   3'- -ACU--UCG-CGUUCGaCGACuGCCG-GCGg -5'
26462 5' -57.7 NC_005357.1 + 14900 0.69 0.319647
Target:  5'- gGGucuGCGCGGcgaucuGCUGCUGGcCGGCCucaaguGCCg -3'
miRNA:   3'- aCUu--CGCGUU------CGACGACU-GCCGG------CGG- -5'
26462 5' -57.7 NC_005357.1 + 14920 0.71 0.228777
Target:  5'- ---cGCGcCGAGaaGCUGGCGGCCgagGCCg -3'
miRNA:   3'- acuuCGC-GUUCgaCGACUGCCGG---CGG- -5'
26462 5' -57.7 NC_005357.1 + 14970 0.68 0.36992
Target:  5'- gGcGGCGCGcuggcauaccAGCgccaggGCcuGCGGCCGCCg -3'
miRNA:   3'- aCuUCGCGU----------UCGa-----CGacUGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 15639 0.7 0.281804
Target:  5'- cGAGGUGCuccAGGCcGCUGAuauggcuuacCGGCuCGCCc -3'
miRNA:   3'- aCUUCGCG---UUCGaCGACU----------GCCG-GCGG- -5'
26462 5' -57.7 NC_005357.1 + 15686 0.72 0.211175
Target:  5'- gGAAucGCaGCGGGCgcGCUGGCGGUgGCCc -3'
miRNA:   3'- aCUU--CG-CGUUCGa-CGACUGCCGgCGG- -5'
26462 5' -57.7 NC_005357.1 + 16158 0.7 0.289079
Target:  5'- cGAuGCGCGAGCcgaccagGCcGGCGGgUGCCc -3'
miRNA:   3'- aCUuCGCGUUCGa------CGaCUGCCgGCGG- -5'
26462 5' -57.7 NC_005357.1 + 16515 0.68 0.364656
Target:  5'- cGAGGUGCcGGUgGuCUGGCcgauauagccguacaGGCCGCCu -3'
miRNA:   3'- aCUUCGCGuUCGaC-GACUG---------------CCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 16593 0.67 0.443891
Target:  5'- cGAGGCcgaccacGCGAuGgUGUUGGC-GCCGCCg -3'
miRNA:   3'- aCUUCG-------CGUU-CgACGACUGcCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 16800 0.76 0.108329
Target:  5'- cGAGGUGgAcgcGCUGCUGGCGaccgcGCCGCCg -3'
miRNA:   3'- aCUUCGCgUu--CGACGACUGC-----CGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 17120 0.66 0.506326
Target:  5'- -cGAGCGCcGGUgGCagGGcCGGCCGCa -3'
miRNA:   3'- acUUCGCGuUCGaCGa-CU-GCCGGCGg -5'
26462 5' -57.7 NC_005357.1 + 18065 0.71 0.234914
Target:  5'- --cGGCGCGGGgUGCgUGcugGGCCGCCg -3'
miRNA:   3'- acuUCGCGUUCgACG-ACug-CCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 18570 0.67 0.406315
Target:  5'- gGAGGC-CGcGCUcGCggUGACGGCCugGCCg -3'
miRNA:   3'- aCUUCGcGUuCGA-CG--ACUGCCGG--CGG- -5'
26462 5' -57.7 NC_005357.1 + 18778 0.69 0.335817
Target:  5'- --uGGUGC-AGUUGCUGcCcGCCGCCg -3'
miRNA:   3'- acuUCGCGuUCGACGACuGcCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 19026 0.7 0.289079
Target:  5'- gUGGGuGCGguAGCc-CUGguaGCGGCCGCCg -3'
miRNA:   3'- -ACUU-CGCguUCGacGAC---UGCCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.