Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26462 | 5' | -57.7 | NC_005357.1 | + | 9729 | 0.68 | 0.352576 |
Target: 5'- cGAAGcCGCGGGCgaacUGCUcgugGugGGCgCGCUu -3' miRNA: 3'- aCUUC-GCGUUCG----ACGA----CugCCG-GCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 37021 | 0.68 | 0.352576 |
Target: 5'- gUGGAGCGUAcgcagaAGgUGCUcGCGGCgCGCa -3' miRNA: 3'- -ACUUCGCGU------UCgACGAcUGCCG-GCGg -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 26870 | 0.68 | 0.352576 |
Target: 5'- aUGGucGGCGgAAGCaagGCUGACGGCaGUg -3' miRNA: 3'- -ACU--UCGCgUUCGa--CGACUGCCGgCGg -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 2007 | 0.68 | 0.352576 |
Target: 5'- uUGAGGCcCAGGCgcucGCUGGCGaaGUCGCg -3' miRNA: 3'- -ACUUCGcGUUCGa---CGACUGC--CGGCGg -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 37320 | 0.68 | 0.344123 |
Target: 5'- --cGGCGCcAGCcgcaccggacGCUGGgcCGGCCGCCu -3' miRNA: 3'- acuUCGCGuUCGa---------CGACU--GCCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 28527 | 0.69 | 0.333354 |
Target: 5'- --cGGCGCu-GCuUGUUGaacggcacgaccuuGCGGCCGCCg -3' miRNA: 3'- acuUCGCGuuCG-ACGAC--------------UGCCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 41290 | 0.69 | 0.326851 |
Target: 5'- -cGAGCGCAAacggccGCUGCUcaugaucGACGGCaaGCCu -3' miRNA: 3'- acUUCGCGUU------CGACGA-------CUGCCGg-CGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 14900 | 0.69 | 0.319647 |
Target: 5'- gGGucuGCGCGGcgaucuGCUGCUGGcCGGCCucaaguGCCg -3' miRNA: 3'- aCUu--CGCGUU------CGACGACU-GCCGG------CGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 41435 | 0.69 | 0.319647 |
Target: 5'- aGuGGCGCGGGCagcggGCUGACGGUgaaggGCUg -3' miRNA: 3'- aCuUCGCGUUCGa----CGACUGCCGg----CGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 11133 | 0.69 | 0.319647 |
Target: 5'- ---cGUGCGAGCaguucggccUGCUGcugGGCCGCCu -3' miRNA: 3'- acuuCGCGUUCG---------ACGACug-CCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 27494 | 0.69 | 0.304068 |
Target: 5'- cGAGGaUGCcGGCgGCcu-CGGCCGCCa -3' miRNA: 3'- aCUUC-GCGuUCGaCGacuGCCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 14920 | 0.71 | 0.228777 |
Target: 5'- ---cGCGcCGAGaaGCUGGCGGCCgagGCCg -3' miRNA: 3'- acuuCGC-GUUCgaCGACUGCCGG---CGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 15686 | 0.72 | 0.211175 |
Target: 5'- gGAAucGCaGCGGGCgcGCUGGCGGUgGCCc -3' miRNA: 3'- aCUU--CG-CGUUCGa-CGACUGCCGgCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 23729 | 0.72 | 0.211175 |
Target: 5'- cGAuGCGCu-GCUGCUGACcgaGGcCCGCg -3' miRNA: 3'- aCUuCGCGuuCGACGACUG---CC-GGCGg -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 27825 | 0.73 | 0.184434 |
Target: 5'- gGAAGCcgacGCA--CUGCUGAaaagcggauCGGCCGCCg -3' miRNA: 3'- aCUUCG----CGUucGACGACU---------GCCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 29355 | 0.73 | 0.174601 |
Target: 5'- gGAGGC-CGAGCgccaauucaacaUGCaGACGGCCGCa -3' miRNA: 3'- aCUUCGcGUUCG------------ACGaCUGCCGGCGg -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 13750 | 0.73 | 0.169861 |
Target: 5'- cGAcguGGCGCGccGC-GCUGGCgaGGCCGCCg -3' miRNA: 3'- aCU---UCGCGUu-CGaCGACUG--CCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 2383 | 0.74 | 0.139802 |
Target: 5'- cGAGGCGCAcGGCa--UGGCGGUCGCUg -3' miRNA: 3'- aCUUCGCGU-UCGacgACUGCCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 16800 | 0.76 | 0.108329 |
Target: 5'- cGAGGUGgAcgcGCUGCUGGCGaccgcGCCGCCg -3' miRNA: 3'- aCUUCGCgUu--CGACGACUGC-----CGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 17120 | 0.66 | 0.506326 |
Target: 5'- -cGAGCGCcGGUgGCagGGcCGGCCGCa -3' miRNA: 3'- acUUCGCGuUCGaCGa-CU-GCCGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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