miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26462 5' -57.7 NC_005357.1 + 18778 0.69 0.335817
Target:  5'- --uGGUGC-AGUUGCUGcCcGCCGCCg -3'
miRNA:   3'- acuUCGCGuUCGACGACuGcCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 34379 0.68 0.344123
Target:  5'- gGgcGCGCGucauggacGGCgGCaagGACGGCgGCCc -3'
miRNA:   3'- aCuuCGCGU--------UCGaCGa--CUGCCGgCGG- -5'
26462 5' -57.7 NC_005357.1 + 6839 0.68 0.344123
Target:  5'- cGGAGaaaGCAGGCUugcccucgccGUUGACGGUCuugGCCu -3'
miRNA:   3'- aCUUCg--CGUUCGA----------CGACUGCCGG---CGG- -5'
26462 5' -57.7 NC_005357.1 + 37320 0.68 0.344123
Target:  5'- --cGGCGCcAGCcgcaccggacGCUGGgcCGGCCGCCu -3'
miRNA:   3'- acuUCGCGuUCGa---------CGACU--GCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 9729 0.68 0.352576
Target:  5'- cGAAGcCGCGGGCgaacUGCUcgugGugGGCgCGCUu -3'
miRNA:   3'- aCUUC-GCGUUCG----ACGA----CugCCG-GCGG- -5'
26462 5' -57.7 NC_005357.1 + 37021 0.68 0.352576
Target:  5'- gUGGAGCGUAcgcagaAGgUGCUcGCGGCgCGCa -3'
miRNA:   3'- -ACUUCGCGU------UCgACGAcUGCCG-GCGg -5'
26462 5' -57.7 NC_005357.1 + 26870 0.68 0.352576
Target:  5'- aUGGucGGCGgAAGCaagGCUGACGGCaGUg -3'
miRNA:   3'- -ACU--UCGCgUUCGa--CGACUGCCGgCGg -5'
26462 5' -57.7 NC_005357.1 + 2007 0.68 0.352576
Target:  5'- uUGAGGCcCAGGCgcucGCUGGCGaaGUCGCg -3'
miRNA:   3'- -ACUUCGcGUUCGa---CGACUGC--CGGCGg -5'
26462 5' -57.7 NC_005357.1 + 13867 0.68 0.361175
Target:  5'- cGAcguGCGCGccGCgaugGCcGGCGGCCGCa -3'
miRNA:   3'- aCUu--CGCGUu-CGa---CGaCUGCCGGCGg -5'
26462 5' -57.7 NC_005357.1 + 16515 0.68 0.364656
Target:  5'- cGAGGUGCcGGUgGuCUGGCcgauauagccguacaGGCCGCCu -3'
miRNA:   3'- aCUUCGCGuUCGaC-GACUG---------------CCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 4807 0.68 0.36992
Target:  5'- cUGgcGCuGCGGGaUUGCUGGCcggcgacaGGUCGCCg -3'
miRNA:   3'- -ACuuCG-CGUUC-GACGACUG--------CCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 14970 0.68 0.36992
Target:  5'- gGcGGCGCGcuggcauaccAGCgccaggGCcuGCGGCCGCCg -3'
miRNA:   3'- aCuUCGCGU----------UCGa-----CGacUGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 29289 0.68 0.378807
Target:  5'- cGAGGCGC-AGUUGCaGAacgacccacgccUGGCCGgCa -3'
miRNA:   3'- aCUUCGCGuUCGACGaCU------------GCCGGCgG- -5'
26462 5' -57.7 NC_005357.1 + 40773 0.68 0.378807
Target:  5'- cGAGGUGCAAGacCUGCUacUGGaaGCCa -3'
miRNA:   3'- aCUUCGCGUUC--GACGAcuGCCggCGG- -5'
26462 5' -57.7 NC_005357.1 + 20256 0.68 0.387837
Target:  5'- cUGGgucGGCuGUu-GCUGCUGuuGGCCGUCg -3'
miRNA:   3'- -ACU---UCG-CGuuCGACGACugCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 6369 0.68 0.387837
Target:  5'- cGggGCGCuGGGUUaCaccagGuCGGCCGCCg -3'
miRNA:   3'- aCuuCGCG-UUCGAcGa----CuGCCGGCGG- -5'
26462 5' -57.7 NC_005357.1 + 20297 0.68 0.387837
Target:  5'- --cAGUaGCGGGUUGCUcGGCGGCCGg- -3'
miRNA:   3'- acuUCG-CGUUCGACGA-CUGCCGGCgg -5'
26462 5' -57.7 NC_005357.1 + 34997 0.67 0.396084
Target:  5'- cGAAGC-CGAaCUGCUGGcCGGCCauccgguGCCc -3'
miRNA:   3'- aCUUCGcGUUcGACGACU-GCCGG-------CGG- -5'
26462 5' -57.7 NC_005357.1 + 9321 0.67 0.397007
Target:  5'- gGcGGCGCAcgucGGCgcgGCgGGCGGCgGCa -3'
miRNA:   3'- aCuUCGCGU----UCGa--CGaCUGCCGgCGg -5'
26462 5' -57.7 NC_005357.1 + 11576 0.67 0.397007
Target:  5'- cGAAGC-CAugccgcccagGGCcGCcGGCuGGCCGCCg -3'
miRNA:   3'- aCUUCGcGU----------UCGaCGaCUG-CCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.