Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26462 | 5' | -57.7 | NC_005357.1 | + | 40773 | 0.68 | 0.378807 |
Target: 5'- cGAGGUGCAAGacCUGCUacUGGaaGCCa -3' miRNA: 3'- aCUUCGCGUUC--GACGAcuGCCggCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 29289 | 0.68 | 0.378807 |
Target: 5'- cGAGGCGC-AGUUGCaGAacgacccacgccUGGCCGgCa -3' miRNA: 3'- aCUUCGCGuUCGACGaCU------------GCCGGCgG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 14970 | 0.68 | 0.36992 |
Target: 5'- gGcGGCGCGcuggcauaccAGCgccaggGCcuGCGGCCGCCg -3' miRNA: 3'- aCuUCGCGU----------UCGa-----CGacUGCCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 4807 | 0.68 | 0.36992 |
Target: 5'- cUGgcGCuGCGGGaUUGCUGGCcggcgacaGGUCGCCg -3' miRNA: 3'- -ACuuCG-CGUUC-GACGACUG--------CCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 16515 | 0.68 | 0.364656 |
Target: 5'- cGAGGUGCcGGUgGuCUGGCcgauauagccguacaGGCCGCCu -3' miRNA: 3'- aCUUCGCGuUCGaC-GACUG---------------CCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 13867 | 0.68 | 0.361175 |
Target: 5'- cGAcguGCGCGccGCgaugGCcGGCGGCCGCa -3' miRNA: 3'- aCUu--CGCGUu-CGa---CGaCUGCCGGCGg -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 37021 | 0.68 | 0.352576 |
Target: 5'- gUGGAGCGUAcgcagaAGgUGCUcGCGGCgCGCa -3' miRNA: 3'- -ACUUCGCGU------UCgACGAcUGCCG-GCGg -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 9729 | 0.68 | 0.352576 |
Target: 5'- cGAAGcCGCGGGCgaacUGCUcgugGugGGCgCGCUu -3' miRNA: 3'- aCUUC-GCGUUCG----ACGA----CugCCG-GCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 26870 | 0.68 | 0.352576 |
Target: 5'- aUGGucGGCGgAAGCaagGCUGACGGCaGUg -3' miRNA: 3'- -ACU--UCGCgUUCGa--CGACUGCCGgCGg -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 2007 | 0.68 | 0.352576 |
Target: 5'- uUGAGGCcCAGGCgcucGCUGGCGaaGUCGCg -3' miRNA: 3'- -ACUUCGcGUUCGa---CGACUGC--CGGCGg -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 34379 | 0.68 | 0.344123 |
Target: 5'- gGgcGCGCGucauggacGGCgGCaagGACGGCgGCCc -3' miRNA: 3'- aCuuCGCGU--------UCGaCGa--CUGCCGgCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 37320 | 0.68 | 0.344123 |
Target: 5'- --cGGCGCcAGCcgcaccggacGCUGGgcCGGCCGCCu -3' miRNA: 3'- acuUCGCGuUCGa---------CGACU--GCCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 6839 | 0.68 | 0.344123 |
Target: 5'- cGGAGaaaGCAGGCUugcccucgccGUUGACGGUCuugGCCu -3' miRNA: 3'- aCUUCg--CGUUCGA----------CGACUGCCGG---CGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 18778 | 0.69 | 0.335817 |
Target: 5'- --uGGUGC-AGUUGCUGcCcGCCGCCg -3' miRNA: 3'- acuUCGCGuUCGACGACuGcCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 30292 | 0.69 | 0.335817 |
Target: 5'- gGAAGCGC-AGC-GCgUGGCGcGUCGCg -3' miRNA: 3'- aCUUCGCGuUCGaCG-ACUGC-CGGCGg -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 8672 | 0.69 | 0.335817 |
Target: 5'- ---uGUGCAgcGGCUGCUG-CG-CCGCCc -3' miRNA: 3'- acuuCGCGU--UCGACGACuGCcGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 28527 | 0.69 | 0.333354 |
Target: 5'- --cGGCGCu-GCuUGUUGaacggcacgaccuuGCGGCCGCCg -3' miRNA: 3'- acuUCGCGuuCG-ACGAC--------------UGCCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 41290 | 0.69 | 0.326851 |
Target: 5'- -cGAGCGCAAacggccGCUGCUcaugaucGACGGCaaGCCu -3' miRNA: 3'- acUUCGCGUU------CGACGA-------CUGCCGg-CGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 11133 | 0.69 | 0.319647 |
Target: 5'- ---cGUGCGAGCaguucggccUGCUGcugGGCCGCCu -3' miRNA: 3'- acuuCGCGUUCG---------ACGACug-CCGGCGG- -5' |
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26462 | 5' | -57.7 | NC_005357.1 | + | 41435 | 0.69 | 0.319647 |
Target: 5'- aGuGGCGCGGGCagcggGCUGACGGUgaaggGCUg -3' miRNA: 3'- aCuUCGCGUUCGa----CGACUGCCGg----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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