miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26463 3' -56.4 NC_005357.1 + 15157 0.71 0.30343
Target:  5'- -gCGGCGAACUgcgGUUCAUugccucggccaagaGCCUGggGCg -3'
miRNA:   3'- aaGCCGCUUGA---CAGGUG--------------CGGGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 15376 0.75 0.170588
Target:  5'- cUCGGUGAGCgcGUCCGCGUgCGGgccGGCg -3'
miRNA:   3'- aAGCCGCUUGa-CAGGUGCGgGCU---UCG- -5'
26463 3' -56.4 NC_005357.1 + 17674 0.71 0.313502
Target:  5'- gUCGGCGGGCUGg--GCGUaggCGAAGCg -3'
miRNA:   3'- aAGCCGCUUGACaggUGCGg--GCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 17770 0.68 0.453481
Target:  5'- -gCGGCGGGCgcgacaacaccaUCCugGCCCGccGGCa -3'
miRNA:   3'- aaGCCGCUUGac----------AGGugCGGGCu-UCG- -5'
26463 3' -56.4 NC_005357.1 + 18039 0.67 0.498718
Target:  5'- gUCGGCGGGCUG-CUugGgggccuuaCCGgcGCg -3'
miRNA:   3'- aAGCCGCUUGACaGGugCg-------GGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 19805 0.71 0.290637
Target:  5'- aUCaGCGAcuaccuGCUG-CCGCGCgCGggGCg -3'
miRNA:   3'- aAGcCGCU------UGACaGGUGCGgGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 20023 0.69 0.37204
Target:  5'- -cUGGCGAAC-GUCaCGCGCuuGAuGCu -3'
miRNA:   3'- aaGCCGCUUGaCAG-GUGCGggCUuCG- -5'
26463 3' -56.4 NC_005357.1 + 24597 0.66 0.585451
Target:  5'- -gUGGCGGGCaucaaCC-CGCCCGAGGg -3'
miRNA:   3'- aaGCCGCUUGaca--GGuGCGGGCUUCg -5'
26463 3' -56.4 NC_005357.1 + 24649 0.7 0.363236
Target:  5'- -cCGGCGGGCcaggauggUGUugUCGCGCCCGccGCg -3'
miRNA:   3'- aaGCCGCUUG--------ACA--GGUGCGGGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 26053 0.66 0.552403
Target:  5'- -gCGGCGGGCgcgcUCCAUGCgcucggcgaacUCGggGCg -3'
miRNA:   3'- aaGCCGCUUGac--AGGUGCG-----------GGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 26428 0.74 0.180248
Target:  5'- -cCGGCGAcCUGUCCcuGCGCgCGgcGCa -3'
miRNA:   3'- aaGCCGCUuGACAGG--UGCGgGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 26771 0.66 0.551311
Target:  5'- cUCgGGCGAGCcGguaagCCAUaucagcgGCCUGGAGCa -3'
miRNA:   3'- aAG-CCGCUUGaCa----GGUG-------CGGGCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 26826 0.67 0.498718
Target:  5'- uUUUGGCaGGCUGcgCCGC-CCCGAuggAGCg -3'
miRNA:   3'- -AAGCCGcUUGACa-GGUGcGGGCU---UCG- -5'
26463 3' -56.4 NC_005357.1 + 27417 0.66 0.563365
Target:  5'- gUCGcGCGc-CUGgcgcaCCGCGCCCGGcGGCc -3'
miRNA:   3'- aAGC-CGCuuGACa----GGUGCGGGCU-UCG- -5'
26463 3' -56.4 NC_005357.1 + 27847 0.67 0.535004
Target:  5'- -cCGGCcgcgccgcugcucaaGAACgUGUCCGCGCUCGccaucuuGGCg -3'
miRNA:   3'- aaGCCG---------------CUUG-ACAGGUGCGGGCu------UCG- -5'
26463 3' -56.4 NC_005357.1 + 27977 0.68 0.437589
Target:  5'- cUCGGUGGGCUGggCCAUcaggcuguaGCCgaUGAGGCg -3'
miRNA:   3'- aAGCCGCUUGACa-GGUG---------CGG--GCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 28379 0.66 0.540422
Target:  5'- cUUGGCGAGgUGUUCcaguucgACGCCgGcGGCg -3'
miRNA:   3'- aAGCCGCUUgACAGG-------UGCGGgCuUCG- -5'
26463 3' -56.4 NC_005357.1 + 28951 0.69 0.399308
Target:  5'- gUCGGCaucGCccagGUcaugcccgacaCCGCGCCCGAGGCc -3'
miRNA:   3'- aAGCCGcu-UGa---CA-----------GGUGCGGGCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 29479 0.71 0.313502
Target:  5'- aUUCGcGCGAACa-UCC-CGCCCGAgaAGCu -3'
miRNA:   3'- -AAGC-CGCUUGacAGGuGCGGGCU--UCG- -5'
26463 3' -56.4 NC_005357.1 + 29791 0.73 0.223866
Target:  5'- uUUCGGCauacGCUGUCuCGCGCUCGAuGCc -3'
miRNA:   3'- -AAGCCGcu--UGACAG-GUGCGGGCUuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.