miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26463 3' -56.4 NC_005357.1 + 804 0.66 0.552403
Target:  5'- -cCGGCGAcGCg--CCGCGCCC--AGCc -3'
miRNA:   3'- aaGCCGCU-UGacaGGUGCGGGcuUCG- -5'
26463 3' -56.4 NC_005357.1 + 1355 0.67 0.498718
Target:  5'- gUCGGCGGccuuGCgcaUCCgGCGaCCGAAGCg -3'
miRNA:   3'- aAGCCGCU----UGac-AGG-UGCgGGCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 3080 0.68 0.437589
Target:  5'- cUUCGGCGAugagcacuuguGCUGUCU-CGaCCUGAuGCg -3'
miRNA:   3'- -AAGCCGCU-----------UGACAGGuGC-GGGCUuCG- -5'
26463 3' -56.4 NC_005357.1 + 3852 0.7 0.363236
Target:  5'- cUCGGCGAAgUUGUaCCAgGCgCCGucGCu -3'
miRNA:   3'- aAGCCGCUU-GACA-GGUgCG-GGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 4626 0.68 0.418182
Target:  5'- gUCGGCGGggauGCUGggCCACGCUgCGucGGCc -3'
miRNA:   3'- aAGCCGCU----UGACa-GGUGCGG-GCu-UCG- -5'
26463 3' -56.4 NC_005357.1 + 5154 0.68 0.447484
Target:  5'- --aGGCGGccgucGCUGcUCACGCCCuuGGCg -3'
miRNA:   3'- aagCCGCU-----UGACaGGUGCGGGcuUCG- -5'
26463 3' -56.4 NC_005357.1 + 5609 0.66 0.552403
Target:  5'- cUCGGCGGGgUGcguUUCGCGCgUGgcGCg -3'
miRNA:   3'- aAGCCGCUUgAC---AGGUGCGgGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 6646 0.67 0.498718
Target:  5'- cUUGGcCGGAgUGUCCGCGCUCauGGUc -3'
miRNA:   3'- aAGCC-GCUUgACAGGUGCGGGcuUCG- -5'
26463 3' -56.4 NC_005357.1 + 6986 0.69 0.408677
Target:  5'- aUUC-GCGGAagcgcGUCCGCGCCCGAuucGCc -3'
miRNA:   3'- -AAGcCGCUUga---CAGGUGCGGGCUu--CG- -5'
26463 3' -56.4 NC_005357.1 + 7254 0.69 0.390077
Target:  5'- gUCGGCcgcccaggucuuGAACUGcugCUugGCCuCGggGCc -3'
miRNA:   3'- aAGCCG------------CUUGACa--GGugCGG-GCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 7395 0.66 0.552403
Target:  5'- -gCGGCGAcCU-UCCACcaGCuuGAAGCc -3'
miRNA:   3'- aaGCCGCUuGAcAGGUG--CGggCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 8156 0.7 0.346067
Target:  5'- gUCGGCGcuGC-GUCCcugcgcguGCGCCCGGAuGCu -3'
miRNA:   3'- aAGCCGCu-UGaCAGG--------UGCGGGCUU-CG- -5'
26463 3' -56.4 NC_005357.1 + 8529 0.68 0.461544
Target:  5'- -cCGGCGAACUugcccagguaucgcaGgCCGCGCUCGAccucauccugGGCg -3'
miRNA:   3'- aaGCCGCUUGA---------------CaGGUGCGGGCU----------UCG- -5'
26463 3' -56.4 NC_005357.1 + 9575 0.67 0.488253
Target:  5'- cUCGGCGccGACcGUCUGCGgCCaggCGAAGCc -3'
miRNA:   3'- aAGCCGC--UUGaCAGGUGC-GG---GCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 9750 0.72 0.254802
Target:  5'- gUCGGCGAACUGcucgggcUUCACGUCgGGcAGCu -3'
miRNA:   3'- aAGCCGCUUGAC-------AGGUGCGGgCU-UCG- -5'
26463 3' -56.4 NC_005357.1 + 11190 0.69 0.380987
Target:  5'- -cCGGCucguAGCUGggCCGCGCgCCGggGUu -3'
miRNA:   3'- aaGCCGc---UUGACa-GGUGCG-GGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 13207 0.73 0.223866
Target:  5'- cUUCGGCGGACUGgacgCCaugcgcGCGUCCGAccuGCc -3'
miRNA:   3'- -AAGCCGCUUGACa---GG------UGCGGGCUu--CG- -5'
26463 3' -56.4 NC_005357.1 + 13647 0.67 0.530684
Target:  5'- -cCGGCGcGGCcGUCCAUGUCCuuGGUg -3'
miRNA:   3'- aaGCCGC-UUGaCAGGUGCGGGcuUCG- -5'
26463 3' -56.4 NC_005357.1 + 14291 0.67 0.509283
Target:  5'- -cCGGCaAGCUG-CUGcCGCCCGAccaGGCg -3'
miRNA:   3'- aaGCCGcUUGACaGGU-GCGGGCU---UCG- -5'
26463 3' -56.4 NC_005357.1 + 14817 0.66 0.574383
Target:  5'- cUCGGCGGcGCUG-CCuuCGCCC-AGGUc -3'
miRNA:   3'- aAGCCGCU-UGACaGGu-GCGGGcUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.