miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26463 3' -56.4 NC_005357.1 + 33496 1.08 0.0006
Target:  5'- gUUCGGCGAACUGUCCACGCCCGAAGCc -3'
miRNA:   3'- -AAGCCGCUUGACAGGUGCGGGCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 15376 0.75 0.170588
Target:  5'- cUCGGUGAGCgcGUCCGCGUgCGGgccGGCg -3'
miRNA:   3'- aAGCCGCUUGa-CAGGUGCGgGCU---UCG- -5'
26463 3' -56.4 NC_005357.1 + 26428 0.74 0.180248
Target:  5'- -cCGGCGAcCUGUCCcuGCGCgCGgcGCa -3'
miRNA:   3'- aaGCCGCUuGACAGG--UGCGgGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 29791 0.73 0.223866
Target:  5'- uUUCGGCauacGCUGUCuCGCGCUCGAuGCc -3'
miRNA:   3'- -AAGCCGcu--UGACAG-GUGCGGGCUuCG- -5'
26463 3' -56.4 NC_005357.1 + 13207 0.73 0.223866
Target:  5'- cUUCGGCGGACUGgacgCCaugcgcGCGUCCGAccuGCc -3'
miRNA:   3'- -AAGCCGCUUGACa---GG------UGCGGGCUu--CG- -5'
26463 3' -56.4 NC_005357.1 + 9750 0.72 0.254802
Target:  5'- gUCGGCGAACUGcucgggcUUCACGUCgGGcAGCu -3'
miRNA:   3'- aAGCCGCUUGAC-------AGGUGCGGgCU-UCG- -5'
26463 3' -56.4 NC_005357.1 + 19805 0.71 0.290637
Target:  5'- aUCaGCGAcuaccuGCUG-CCGCGCgCGggGCg -3'
miRNA:   3'- aAGcCGCU------UGACaGGUGCGgGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 15157 0.71 0.30343
Target:  5'- -gCGGCGAACUgcgGUUCAUugccucggccaagaGCCUGggGCg -3'
miRNA:   3'- aaGCCGCUUGA---CAGGUG--------------CGGGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 29479 0.71 0.313502
Target:  5'- aUUCGcGCGAACa-UCC-CGCCCGAgaAGCu -3'
miRNA:   3'- -AAGC-CGCUUGacAGGuGCGGGCU--UCG- -5'
26463 3' -56.4 NC_005357.1 + 17674 0.71 0.313502
Target:  5'- gUCGGCGGGCUGg--GCGUaggCGAAGCg -3'
miRNA:   3'- aAGCCGCUUGACaggUGCGg--GCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 31004 0.7 0.321421
Target:  5'- -aCGcGCGAcCUGUCCACGggcuugccggCCGAGGCa -3'
miRNA:   3'- aaGC-CGCUuGACAGGUGCg---------GGCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 31837 0.7 0.336049
Target:  5'- -gCGGUGcaGGCUGcgcgccuggguaCUACGCCCGAGGCg -3'
miRNA:   3'- aaGCCGC--UUGACa-----------GGUGCGGGCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 8156 0.7 0.346067
Target:  5'- gUCGGCGcuGC-GUCCcugcgcguGCGCCCGGAuGCu -3'
miRNA:   3'- aAGCCGCu-UGaCAGG--------UGCGGGCUU-CG- -5'
26463 3' -56.4 NC_005357.1 + 32936 0.7 0.363236
Target:  5'- -aCGGCGGaacagGCUGgcaUgACGCCCGAAGa -3'
miRNA:   3'- aaGCCGCU-----UGACa--GgUGCGGGCUUCg -5'
26463 3' -56.4 NC_005357.1 + 3852 0.7 0.363236
Target:  5'- cUCGGCGAAgUUGUaCCAgGCgCCGucGCu -3'
miRNA:   3'- aAGCCGCUU-GACA-GGUgCG-GGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 24649 0.7 0.363236
Target:  5'- -cCGGCGGGCcaggauggUGUugUCGCGCCCGccGCg -3'
miRNA:   3'- aaGCCGCUUG--------ACA--GGUGCGGGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 20023 0.69 0.37204
Target:  5'- -cUGGCGAAC-GUCaCGCGCuuGAuGCu -3'
miRNA:   3'- aaGCCGCUUGaCAG-GUGCGggCUuCG- -5'
26463 3' -56.4 NC_005357.1 + 32867 0.69 0.380987
Target:  5'- gUCGGCGccgaGAUUGU-CGCGCCCGAc-- -3'
miRNA:   3'- aAGCCGC----UUGACAgGUGCGGGCUucg -5'
26463 3' -56.4 NC_005357.1 + 11190 0.69 0.380987
Target:  5'- -cCGGCucguAGCUGggCCGCGCgCCGggGUu -3'
miRNA:   3'- aaGCCGc---UUGACa-GGUGCG-GGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 7254 0.69 0.390077
Target:  5'- gUCGGCcgcccaggucuuGAACUGcugCUugGCCuCGggGCc -3'
miRNA:   3'- aAGCCG------------CUUGACa--GGugCGG-GCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.