miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26463 3' -56.4 NC_005357.1 + 13647 0.67 0.530684
Target:  5'- -cCGGCGcGGCcGUCCAUGUCCuuGGUg -3'
miRNA:   3'- aaGCCGC-UUGaCAGGUGCGGGcuUCG- -5'
26463 3' -56.4 NC_005357.1 + 3080 0.68 0.437589
Target:  5'- cUUCGGCGAugagcacuuguGCUGUCU-CGaCCUGAuGCg -3'
miRNA:   3'- -AAGCCGCU-----------UGACAGGuGC-GGGCUuCG- -5'
26463 3' -56.4 NC_005357.1 + 39673 0.68 0.447484
Target:  5'- gUCGGCagug-GUCggCACGCCCGAgcAGCg -3'
miRNA:   3'- aAGCCGcuugaCAG--GUGCGGGCU--UCG- -5'
26463 3' -56.4 NC_005357.1 + 8529 0.68 0.461544
Target:  5'- -cCGGCGAACUugcccagguaucgcaGgCCGCGCUCGAccucauccugGGCg -3'
miRNA:   3'- aaGCCGCUUGA---------------CaGGUGCGGGCU----------UCG- -5'
26463 3' -56.4 NC_005357.1 + 41597 0.67 0.477891
Target:  5'- gUCGGCucGCUGUCUcuGCGCgCGcucAAGCc -3'
miRNA:   3'- aAGCCGcuUGACAGG--UGCGgGC---UUCG- -5'
26463 3' -56.4 NC_005357.1 + 6646 0.67 0.498718
Target:  5'- cUUGGcCGGAgUGUCCGCGCUCauGGUc -3'
miRNA:   3'- aAGCC-GCUUgACAGGUGCGGGcuUCG- -5'
26463 3' -56.4 NC_005357.1 + 18039 0.67 0.498718
Target:  5'- gUCGGCGGGCUG-CUugGgggccuuaCCGgcGCg -3'
miRNA:   3'- aAGCCGCUUGACaGGugCg-------GGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 26826 0.67 0.498718
Target:  5'- uUUUGGCaGGCUGcgCCGC-CCCGAuggAGCg -3'
miRNA:   3'- -AAGCCGcUUGACa-GGUGcGGGCU---UCG- -5'
26463 3' -56.4 NC_005357.1 + 1355 0.67 0.498718
Target:  5'- gUCGGCGGccuuGCgcaUCCgGCGaCCGAAGCg -3'
miRNA:   3'- aAGCCGCU----UGac-AGG-UGCgGGCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 27977 0.68 0.437589
Target:  5'- cUCGGUGGGCUGggCCAUcaggcuguaGCCgaUGAGGCg -3'
miRNA:   3'- aAGCCGCUUGACa-GGUG---------CGG--GCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 32635 0.68 0.42782
Target:  5'- -gCGGUc-GCUGUCCugucgaaguucgGCGCCgCGAAGCu -3'
miRNA:   3'- aaGCCGcuUGACAGG------------UGCGG-GCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 6986 0.69 0.408677
Target:  5'- aUUC-GCGGAagcgcGUCCGCGCCCGAuucGCc -3'
miRNA:   3'- -AAGcCGCUUga---CAGGUGCGGGCUu--CG- -5'
26463 3' -56.4 NC_005357.1 + 29791 0.73 0.223866
Target:  5'- uUUCGGCauacGCUGUCuCGCGCUCGAuGCc -3'
miRNA:   3'- -AAGCCGcu--UGACAG-GUGCGGGCUuCG- -5'
26463 3' -56.4 NC_005357.1 + 17674 0.71 0.313502
Target:  5'- gUCGGCGGGCUGg--GCGUaggCGAAGCg -3'
miRNA:   3'- aAGCCGCUUGACaggUGCGg--GCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 31004 0.7 0.321421
Target:  5'- -aCGcGCGAcCUGUCCACGggcuugccggCCGAGGCa -3'
miRNA:   3'- aaGC-CGCUuGACAGGUGCg---------GGCUUCG- -5'
26463 3' -56.4 NC_005357.1 + 8156 0.7 0.346067
Target:  5'- gUCGGCGcuGC-GUCCcugcgcguGCGCCCGGAuGCu -3'
miRNA:   3'- aAGCCGCu-UGaCAGG--------UGCGGGCUU-CG- -5'
26463 3' -56.4 NC_005357.1 + 24649 0.7 0.363236
Target:  5'- -cCGGCGGGCcaggauggUGUugUCGCGCCCGccGCg -3'
miRNA:   3'- aaGCCGCUUG--------ACA--GGUGCGGGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 3852 0.7 0.363236
Target:  5'- cUCGGCGAAgUUGUaCCAgGCgCCGucGCu -3'
miRNA:   3'- aAGCCGCUU-GACA-GGUgCG-GGCuuCG- -5'
26463 3' -56.4 NC_005357.1 + 32867 0.69 0.380987
Target:  5'- gUCGGCGccgaGAUUGU-CGCGCCCGAc-- -3'
miRNA:   3'- aAGCCGC----UUGACAgGUGCGGGCUucg -5'
26463 3' -56.4 NC_005357.1 + 7254 0.69 0.390077
Target:  5'- gUCGGCcgcccaggucuuGAACUGcugCUugGCCuCGggGCc -3'
miRNA:   3'- aAGCCG------------CUUGACa--GGugCGG-GCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.