Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26464 | 3' | -50.2 | NC_005357.1 | + | 24953 | 0.66 | 0.900335 |
Target: 5'- uCGcCGCUGUUCGugcAGGCCcugGCGuggcaccuGGCCu -3' miRNA: 3'- uGCuGCGAUAAGU---UCUGGa--CGU--------UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 16156 | 0.66 | 0.900335 |
Target: 5'- cGCGAUGCg---CGAG-CCgacCAGGCCg -3' miRNA: 3'- -UGCUGCGauaaGUUCuGGac-GUUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 24807 | 0.66 | 0.892888 |
Target: 5'- cACGAUGCggcaaacaUCGAGGCCgGUAucgacaacgcgcAGCCg -3' miRNA: 3'- -UGCUGCGaua-----AGUUCUGGaCGU------------UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 21802 | 0.66 | 0.892888 |
Target: 5'- aACGAgCGCaGgcCGAcaccGACCUGCGAcGCCg -3' miRNA: 3'- -UGCU-GCGaUaaGUU----CUGGACGUU-CGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 39991 | 0.66 | 0.892888 |
Target: 5'- gUGGCGCcgaucUUCGAGgccgGCCUGCu-GCCg -3' miRNA: 3'- uGCUGCGau---AAGUUC----UGGACGuuCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 15064 | 0.66 | 0.892888 |
Target: 5'- cCGAaugGCUGgaCGAGugCUGCGaggucGGCCc -3' miRNA: 3'- uGCUg--CGAUaaGUUCugGACGU-----UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 24562 | 0.66 | 0.892888 |
Target: 5'- cGCGGCGaugg-CGAGGCCggccacgGuCGGGCCg -3' miRNA: 3'- -UGCUGCgauaaGUUCUGGa------C-GUUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 10897 | 0.66 | 0.880355 |
Target: 5'- -aGGCGCUGUUuccacggcaacacagCGAGGCCcagcaGCAcGCCg -3' miRNA: 3'- ugCUGCGAUAA---------------GUUCUGGa----CGUuCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 9311 | 0.66 | 0.877105 |
Target: 5'- cACGGCGacAUUCAGGGCCUuggguucauggGCGaggauguaGGCCg -3' miRNA: 3'- -UGCUGCgaUAAGUUCUGGA-----------CGU--------UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 36149 | 0.66 | 0.877105 |
Target: 5'- gGCGAC-CUGUUC--GGCCUGCccAGCg -3' miRNA: 3'- -UGCUGcGAUAAGuuCUGGACGu-UCGg -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 31262 | 0.66 | 0.877105 |
Target: 5'- gGCGACGUgaUAUUCGuuGACCccgacgugGCAgcgaAGCCu -3' miRNA: 3'- -UGCUGCG--AUAAGUu-CUGGa-------CGU----UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 17682 | 0.66 | 0.868784 |
Target: 5'- cCGACaGCaugggUCGAGGCCgcGCAGGCg -3' miRNA: 3'- uGCUG-CGaua--AGUUCUGGa-CGUUCGg -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 30278 | 0.66 | 0.868784 |
Target: 5'- cGCGAguCGCcggaaaacgUCGGGuagcgccCCUGCGAGCCg -3' miRNA: 3'- -UGCU--GCGaua------AGUUCu------GGACGUUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 23179 | 0.67 | 0.860186 |
Target: 5'- uCGACGCcgagaaGUUCAuGGGCCUGac-GCCg -3' miRNA: 3'- uGCUGCGa-----UAAGU-UCUGGACguuCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 18165 | 0.67 | 0.860186 |
Target: 5'- cCGGCGCcacgcUCAAGGug-GCAAGCCg -3' miRNA: 3'- uGCUGCGaua--AGUUCUggaCGUUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 16108 | 0.67 | 0.860186 |
Target: 5'- cGCGguGCGCg--UCAAGACCgUGCcuGUCc -3' miRNA: 3'- -UGC--UGCGauaAGUUCUGG-ACGuuCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 2113 | 0.67 | 0.860186 |
Target: 5'- aAUGACGCUGcUUCAAuucauCgUGCAgcAGCCg -3' miRNA: 3'- -UGCUGCGAU-AAGUUcu---GgACGU--UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 7194 | 0.67 | 0.850418 |
Target: 5'- gGCGACGCUGggcuugccaUCGgacugcgugaugaAGcCCUGCAacuucGGCCa -3' miRNA: 3'- -UGCUGCGAUa--------AGU-------------UCuGGACGU-----UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 39940 | 0.67 | 0.842194 |
Target: 5'- uCGGCGCUcgaAUUCaAAGACCgccuugUGCAGcacGCCu -3' miRNA: 3'- uGCUGCGA---UAAG-UUCUGG------ACGUU---CGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 32789 | 0.67 | 0.842194 |
Target: 5'- cGCGugGCUGcUCAAcguguaccgcGACUUGaAGGCCc -3' miRNA: 3'- -UGCugCGAUaAGUU----------CUGGACgUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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