miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26464 3' -50.2 NC_005357.1 + 24953 0.66 0.900335
Target:  5'- uCGcCGCUGUUCGugcAGGCCcugGCGuggcaccuGGCCu -3'
miRNA:   3'- uGCuGCGAUAAGU---UCUGGa--CGU--------UCGG- -5'
26464 3' -50.2 NC_005357.1 + 16156 0.66 0.900335
Target:  5'- cGCGAUGCg---CGAG-CCgacCAGGCCg -3'
miRNA:   3'- -UGCUGCGauaaGUUCuGGac-GUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 24807 0.66 0.892888
Target:  5'- cACGAUGCggcaaacaUCGAGGCCgGUAucgacaacgcgcAGCCg -3'
miRNA:   3'- -UGCUGCGaua-----AGUUCUGGaCGU------------UCGG- -5'
26464 3' -50.2 NC_005357.1 + 21802 0.66 0.892888
Target:  5'- aACGAgCGCaGgcCGAcaccGACCUGCGAcGCCg -3'
miRNA:   3'- -UGCU-GCGaUaaGUU----CUGGACGUU-CGG- -5'
26464 3' -50.2 NC_005357.1 + 39991 0.66 0.892888
Target:  5'- gUGGCGCcgaucUUCGAGgccgGCCUGCu-GCCg -3'
miRNA:   3'- uGCUGCGau---AAGUUC----UGGACGuuCGG- -5'
26464 3' -50.2 NC_005357.1 + 15064 0.66 0.892888
Target:  5'- cCGAaugGCUGgaCGAGugCUGCGaggucGGCCc -3'
miRNA:   3'- uGCUg--CGAUaaGUUCugGACGU-----UCGG- -5'
26464 3' -50.2 NC_005357.1 + 24562 0.66 0.892888
Target:  5'- cGCGGCGaugg-CGAGGCCggccacgGuCGGGCCg -3'
miRNA:   3'- -UGCUGCgauaaGUUCUGGa------C-GUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 10897 0.66 0.880355
Target:  5'- -aGGCGCUGUUuccacggcaacacagCGAGGCCcagcaGCAcGCCg -3'
miRNA:   3'- ugCUGCGAUAA---------------GUUCUGGa----CGUuCGG- -5'
26464 3' -50.2 NC_005357.1 + 9311 0.66 0.877105
Target:  5'- cACGGCGacAUUCAGGGCCUuggguucauggGCGaggauguaGGCCg -3'
miRNA:   3'- -UGCUGCgaUAAGUUCUGGA-----------CGU--------UCGG- -5'
26464 3' -50.2 NC_005357.1 + 36149 0.66 0.877105
Target:  5'- gGCGAC-CUGUUC--GGCCUGCccAGCg -3'
miRNA:   3'- -UGCUGcGAUAAGuuCUGGACGu-UCGg -5'
26464 3' -50.2 NC_005357.1 + 31262 0.66 0.877105
Target:  5'- gGCGACGUgaUAUUCGuuGACCccgacgugGCAgcgaAGCCu -3'
miRNA:   3'- -UGCUGCG--AUAAGUu-CUGGa-------CGU----UCGG- -5'
26464 3' -50.2 NC_005357.1 + 17682 0.66 0.868784
Target:  5'- cCGACaGCaugggUCGAGGCCgcGCAGGCg -3'
miRNA:   3'- uGCUG-CGaua--AGUUCUGGa-CGUUCGg -5'
26464 3' -50.2 NC_005357.1 + 30278 0.66 0.868784
Target:  5'- cGCGAguCGCcggaaaacgUCGGGuagcgccCCUGCGAGCCg -3'
miRNA:   3'- -UGCU--GCGaua------AGUUCu------GGACGUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 23179 0.67 0.860186
Target:  5'- uCGACGCcgagaaGUUCAuGGGCCUGac-GCCg -3'
miRNA:   3'- uGCUGCGa-----UAAGU-UCUGGACguuCGG- -5'
26464 3' -50.2 NC_005357.1 + 18165 0.67 0.860186
Target:  5'- cCGGCGCcacgcUCAAGGug-GCAAGCCg -3'
miRNA:   3'- uGCUGCGaua--AGUUCUggaCGUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 16108 0.67 0.860186
Target:  5'- cGCGguGCGCg--UCAAGACCgUGCcuGUCc -3'
miRNA:   3'- -UGC--UGCGauaAGUUCUGG-ACGuuCGG- -5'
26464 3' -50.2 NC_005357.1 + 2113 0.67 0.860186
Target:  5'- aAUGACGCUGcUUCAAuucauCgUGCAgcAGCCg -3'
miRNA:   3'- -UGCUGCGAU-AAGUUcu---GgACGU--UCGG- -5'
26464 3' -50.2 NC_005357.1 + 7194 0.67 0.850418
Target:  5'- gGCGACGCUGggcuugccaUCGgacugcgugaugaAGcCCUGCAacuucGGCCa -3'
miRNA:   3'- -UGCUGCGAUa--------AGU-------------UCuGGACGU-----UCGG- -5'
26464 3' -50.2 NC_005357.1 + 39940 0.67 0.842194
Target:  5'- uCGGCGCUcgaAUUCaAAGACCgccuugUGCAGcacGCCu -3'
miRNA:   3'- uGCUGCGA---UAAG-UUCUGG------ACGUU---CGG- -5'
26464 3' -50.2 NC_005357.1 + 32789 0.67 0.842194
Target:  5'- cGCGugGCUGcUCAAcguguaccgcGACUUGaAGGCCc -3'
miRNA:   3'- -UGCugCGAUaAGUU----------CUGGACgUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.