miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26464 3' -50.2 NC_005357.1 + 41821 0.69 0.716741
Target:  5'- cACGGCGCUGcuggccGACCcGCAGGCg -3'
miRNA:   3'- -UGCUGCGAUaaguu-CUGGaCGUUCGg -5'
26464 3' -50.2 NC_005357.1 + 41298 0.73 0.498427
Target:  5'- aACGGCcGCUGcUCAuGAUCgacgGCAAGCCu -3'
miRNA:   3'- -UGCUG-CGAUaAGUuCUGGa---CGUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 40771 0.74 0.444961
Target:  5'- cGCGAgGUg---CAAGACCUGCuacuggAAGCCa -3'
miRNA:   3'- -UGCUgCGauaaGUUCUGGACG------UUCGG- -5'
26464 3' -50.2 NC_005357.1 + 39991 0.66 0.892888
Target:  5'- gUGGCGCcgaucUUCGAGgccgGCCUGCu-GCCg -3'
miRNA:   3'- uGCUGCGau---AAGUUC----UGGACGuuCGG- -5'
26464 3' -50.2 NC_005357.1 + 39940 0.67 0.842194
Target:  5'- uCGGCGCUcgaAUUCaAAGACCgccuugUGCAGcacGCCu -3'
miRNA:   3'- uGCUGCGA---UAAG-UUCUGG------ACGUU---CGG- -5'
26464 3' -50.2 NC_005357.1 + 39768 0.69 0.716741
Target:  5'- uCGAUGCguaccgCAAGACCUcgcacgGCAAGCg -3'
miRNA:   3'- uGCUGCGauaa--GUUCUGGA------CGUUCGg -5'
26464 3' -50.2 NC_005357.1 + 37915 0.68 0.793064
Target:  5'- uGCGAUGCgc--CAAGcGCCUGUGGcGCCg -3'
miRNA:   3'- -UGCUGCGauaaGUUC-UGGACGUU-CGG- -5'
26464 3' -50.2 NC_005357.1 + 37416 0.68 0.772002
Target:  5'- cGCGGCGCUGaaagCGGacugcgccGACCUGCuguucGCCa -3'
miRNA:   3'- -UGCUGCGAUaa--GUU--------CUGGACGuu---CGG- -5'
26464 3' -50.2 NC_005357.1 + 37159 0.74 0.480988
Target:  5'- uCGACGCUGgaaCGAcgcauugccgaccccGACCUGCcGGCCg -3'
miRNA:   3'- uGCUGCGAUaa-GUU---------------CUGGACGuUCGG- -5'
26464 3' -50.2 NC_005357.1 + 36149 0.66 0.877105
Target:  5'- gGCGAC-CUGUUC--GGCCUGCccAGCg -3'
miRNA:   3'- -UGCUGcGAUAAGuuCUGGACGu-UCGg -5'
26464 3' -50.2 NC_005357.1 + 35635 0.74 0.434654
Target:  5'- aGCGAUGCgcaagUCAAGGCgCUGaacCAGGCCa -3'
miRNA:   3'- -UGCUGCGaua--AGUUCUG-GAC---GUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 35371 0.71 0.635784
Target:  5'- aACGACGCUGccgccCGAGGCCaUGCGccuGCUg -3'
miRNA:   3'- -UGCUGCGAUaa---GUUCUGG-ACGUu--CGG- -5'
26464 3' -50.2 NC_005357.1 + 35154 0.71 0.620601
Target:  5'- uACGGCcccgaggccaagcaGCaGUUCAAGACCUGgGcGGCCg -3'
miRNA:   3'- -UGCUG--------------CGaUAAGUUCUGGACgU-UCGG- -5'
26464 3' -50.2 NC_005357.1 + 35076 0.74 0.476675
Target:  5'- aACGACGCcgaggUCGAGGCC-GCGcucaaGGCCa -3'
miRNA:   3'- -UGCUGCGaua--AGUUCUGGaCGU-----UCGG- -5'
26464 3' -50.2 NC_005357.1 + 35058 0.69 0.716741
Target:  5'- aACGACGUgAUUCAcGACCUGgCGuGGCa -3'
miRNA:   3'- -UGCUGCGaUAAGUuCUGGAC-GU-UCGg -5'
26464 3' -50.2 NC_005357.1 + 34467 0.74 0.444961
Target:  5'- cACGAUGCgcgcCGAGGCCacggGCAAGCUg -3'
miRNA:   3'- -UGCUGCGauaaGUUCUGGa---CGUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 33005 1.12 0.001504
Target:  5'- aACGACGCUAUUCAAGACCUGCAAGCCc -3'
miRNA:   3'- -UGCUGCGAUAAGUUCUGGACGUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 32789 0.67 0.842194
Target:  5'- cGCGugGCUGcUCAAcguguaccgcGACUUGaAGGCCc -3'
miRNA:   3'- -UGCugCGAUaAGUU----------CUGGACgUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 32591 0.69 0.728037
Target:  5'- cCGACGCUGUgacCAAGcugGCCcGCGucaagGGCCg -3'
miRNA:   3'- uGCUGCGAUAa--GUUC---UGGaCGU-----UCGG- -5'
26464 3' -50.2 NC_005357.1 + 31921 0.71 0.60078
Target:  5'- uGCGGCGU--UUCGAGGCCUGCucgacacGCa -3'
miRNA:   3'- -UGCUGCGauAAGUUCUGGACGuu-----CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.