Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26464 | 3' | -50.2 | NC_005357.1 | + | 17682 | 0.66 | 0.868784 |
Target: 5'- cCGACaGCaugggUCGAGGCCgcGCAGGCg -3' miRNA: 3'- uGCUG-CGaua--AGUUCUGGa-CGUUCGg -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 18165 | 0.67 | 0.860186 |
Target: 5'- cCGGCGCcacgcUCAAGGug-GCAAGCCg -3' miRNA: 3'- uGCUGCGaua--AGUUCUggaCGUUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 18251 | 0.68 | 0.802302 |
Target: 5'- -gGAUGCcggUCAcGACCUGCGccgagaacuugccGGCCg -3' miRNA: 3'- ugCUGCGauaAGUuCUGGACGU-------------UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 21387 | 0.67 | 0.823208 |
Target: 5'- aAUGGCGCg---CuGGGCCUGCGcgAGCa -3' miRNA: 3'- -UGCUGCGauaaGuUCUGGACGU--UCGg -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 21802 | 0.66 | 0.892888 |
Target: 5'- aACGAgCGCaGgcCGAcaccGACCUGCGAcGCCg -3' miRNA: 3'- -UGCU-GCGaUaaGUU----CUGGACGUU-CGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 22229 | 0.68 | 0.81337 |
Target: 5'- -gGGCGCUGc-CAAGACCgaggGCGacgacaaggcgaAGCCg -3' miRNA: 3'- ugCUGCGAUaaGUUCUGGa---CGU------------UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 23179 | 0.67 | 0.860186 |
Target: 5'- uCGACGCcgagaaGUUCAuGGGCCUGac-GCCg -3' miRNA: 3'- uGCUGCGa-----UAAGU-UCUGGACguuCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 24562 | 0.66 | 0.892888 |
Target: 5'- cGCGGCGaugg-CGAGGCCggccacgGuCGGGCCg -3' miRNA: 3'- -UGCUGCgauaaGUUCUGGa------C-GUUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 24807 | 0.66 | 0.892888 |
Target: 5'- cACGAUGCggcaaacaUCGAGGCCgGUAucgacaacgcgcAGCCg -3' miRNA: 3'- -UGCUGCGaua-----AGUUCUGGaCGU------------UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 24953 | 0.66 | 0.900335 |
Target: 5'- uCGcCGCUGUUCGugcAGGCCcugGCGuggcaccuGGCCu -3' miRNA: 3'- uGCuGCGAUAAGU---UCUGGa--CGU--------UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 25323 | 0.68 | 0.81337 |
Target: 5'- cCGGCGCUcgUCGccgGGAUUgucCAGGCCg -3' miRNA: 3'- uGCUGCGAuaAGU---UCUGGac-GUUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 25799 | 0.71 | 0.624104 |
Target: 5'- cGCGGCGCgcucgGUaUCGuuGAUCUGCAccgGGCCg -3' miRNA: 3'- -UGCUGCGa----UA-AGUu-CUGGACGU---UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 25986 | 0.69 | 0.716741 |
Target: 5'- uACGACGCcgUGUUCAAcGCCgccgGCGauuaccccgcGGCCg -3' miRNA: 3'- -UGCUGCG--AUAAGUUcUGGa---CGU----------UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 26601 | 0.77 | 0.321851 |
Target: 5'- gACGGCG-UGUUCGAGuCCUGCGcggugguGGCCg -3' miRNA: 3'- -UGCUGCgAUAAGUUCuGGACGU-------UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 26874 | 0.69 | 0.75029 |
Target: 5'- gACGGCGCcAUUgAccuGGACgUGgAGGCCg -3' miRNA: 3'- -UGCUGCGaUAAgU---UCUGgACgUUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 28280 | 0.68 | 0.803318 |
Target: 5'- aACG-CGCUGgaac-GGCCggaagGCAAGCCg -3' miRNA: 3'- -UGCuGCGAUaaguuCUGGa----CGUUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 30278 | 0.66 | 0.868784 |
Target: 5'- cGCGAguCGCcggaaaacgUCGGGuagcgccCCUGCGAGCCg -3' miRNA: 3'- -UGCU--GCGaua------AGUUCu------GGACGUUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 30395 | 0.76 | 0.357499 |
Target: 5'- gAC-ACGCUGggCAAGACCUcGCcGGCCa -3' miRNA: 3'- -UGcUGCGAUaaGUUCUGGA-CGuUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 31007 | 0.7 | 0.693882 |
Target: 5'- cGCGAC-CUGUcCAcGGGCUUGCcGGCCg -3' miRNA: 3'- -UGCUGcGAUAaGU-UCUGGACGuUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 31262 | 0.66 | 0.877105 |
Target: 5'- gGCGACGUgaUAUUCGuuGACCccgacgugGCAgcgaAGCCu -3' miRNA: 3'- -UGCUGCG--AUAAGUu-CUGGa-------CGU----UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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