Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26464 | 3' | -50.2 | NC_005357.1 | + | 11514 | 0.72 | 0.589157 |
Target: 5'- aGCGccuGCGCUGgcgUGAGGcCCUGCGAGCg -3' miRNA: 3'- -UGC---UGCGAUaa-GUUCU-GGACGUUCGg -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 41298 | 0.73 | 0.498427 |
Target: 5'- aACGGCcGCUGcUCAuGAUCgacgGCAAGCCu -3' miRNA: 3'- -UGCUG-CGAUaAGUuCUGGa---CGUUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 37159 | 0.74 | 0.480988 |
Target: 5'- uCGACGCUGgaaCGAcgcauugccgaccccGACCUGCcGGCCg -3' miRNA: 3'- uGCUGCGAUaa-GUU---------------CUGGACGuUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 35076 | 0.74 | 0.476675 |
Target: 5'- aACGACGCcgaggUCGAGGCC-GCGcucaaGGCCa -3' miRNA: 3'- -UGCUGCGaua--AGUUCUGGaCGU-----UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 40771 | 0.74 | 0.444961 |
Target: 5'- cGCGAgGUg---CAAGACCUGCuacuggAAGCCa -3' miRNA: 3'- -UGCUgCGauaaGUUCUGGACG------UUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 35635 | 0.74 | 0.434654 |
Target: 5'- aGCGAUGCgcaagUCAAGGCgCUGaacCAGGCCa -3' miRNA: 3'- -UGCUGCGaua--AGUUCUG-GAC---GUUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 12682 | 0.69 | 0.716741 |
Target: 5'- -aGGCGCgugUCGAGGCCcGCcuugauAGCCu -3' miRNA: 3'- ugCUGCGauaAGUUCUGGaCGu-----UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 9537 | 0.69 | 0.726911 |
Target: 5'- uGCGGCcCUGUUCGGccagugcGAUCUGCucGCCg -3' miRNA: 3'- -UGCUGcGAUAAGUU-------CUGGACGuuCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 24562 | 0.66 | 0.892888 |
Target: 5'- cGCGGCGaugg-CGAGGCCggccacgGuCGGGCCg -3' miRNA: 3'- -UGCUGCgauaaGUUCUGGa------C-GUUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 31262 | 0.66 | 0.877105 |
Target: 5'- gGCGACGUgaUAUUCGuuGACCccgacgugGCAgcgaAGCCu -3' miRNA: 3'- -UGCUGCG--AUAAGUu-CUGGa-------CGU----UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 2113 | 0.67 | 0.860186 |
Target: 5'- aAUGACGCUGcUUCAAuucauCgUGCAgcAGCCg -3' miRNA: 3'- -UGCUGCGAU-AAGUUcu---GgACGU--UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 30278 | 0.66 | 0.868784 |
Target: 5'- cGCGAguCGCcggaaaacgUCGGGuagcgccCCUGCGAGCCg -3' miRNA: 3'- -UGCU--GCGaua------AGUUCu------GGACGUUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 6224 | 0.67 | 0.842194 |
Target: 5'- uGCGuuuUGCcuucggcCAGGGCCUGCAcGCCg -3' miRNA: 3'- -UGCu--GCGauaa---GUUCUGGACGUuCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 21387 | 0.67 | 0.823208 |
Target: 5'- aAUGGCGCg---CuGGGCCUGCGcgAGCa -3' miRNA: 3'- -UGCUGCGauaaGuUCUGGACGU--UCGg -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 11273 | 0.67 | 0.823208 |
Target: 5'- uGCGGCGCUGggacgCucGGCCagGUAGGCg -3' miRNA: 3'- -UGCUGCGAUaa---GuuCUGGa-CGUUCGg -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 25323 | 0.68 | 0.81337 |
Target: 5'- cCGGCGCUcgUCGccgGGAUUgucCAGGCCg -3' miRNA: 3'- uGCUGCGAuaAGU---UCUGGac-GUUCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 18251 | 0.68 | 0.802302 |
Target: 5'- -gGAUGCcggUCAcGACCUGCGccgagaacuugccGGCCg -3' miRNA: 3'- ugCUGCGauaAGUuCUGGACGU-------------UCGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 37915 | 0.68 | 0.793064 |
Target: 5'- uGCGAUGCgc--CAAGcGCCUGUGGcGCCg -3' miRNA: 3'- -UGCUGCGauaaGUUC-UGGACGUU-CGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 37416 | 0.68 | 0.772002 |
Target: 5'- cGCGGCGCUGaaagCGGacugcgccGACCUGCuguucGCCa -3' miRNA: 3'- -UGCUGCGAUaa--GUU--------CUGGACGuu---CGG- -5' |
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26464 | 3' | -50.2 | NC_005357.1 | + | 32591 | 0.69 | 0.728037 |
Target: 5'- cCGACGCUGUgacCAAGcugGCCcGCGucaagGGCCg -3' miRNA: 3'- uGCUGCGAUAa--GUUC---UGGaCGU-----UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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