miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26464 3' -50.2 NC_005357.1 + 23179 0.67 0.860186
Target:  5'- uCGACGCcgagaaGUUCAuGGGCCUGac-GCCg -3'
miRNA:   3'- uGCUGCGa-----UAAGU-UCUGGACguuCGG- -5'
26464 3' -50.2 NC_005357.1 + 17682 0.66 0.868784
Target:  5'- cCGACaGCaugggUCGAGGCCgcGCAGGCg -3'
miRNA:   3'- uGCUG-CGaua--AGUUCUGGa-CGUUCGg -5'
26464 3' -50.2 NC_005357.1 + 7194 0.67 0.850418
Target:  5'- gGCGACGCUGggcuugccaUCGgacugcgugaugaAGcCCUGCAacuucGGCCa -3'
miRNA:   3'- -UGCUGCGAUa--------AGU-------------UCuGGACGU-----UCGG- -5'
26464 3' -50.2 NC_005357.1 + 13621 0.67 0.83282
Target:  5'- gACGGCGCgcuggcugcUCAAGAUCggcaaccaggGCAAGCg -3'
miRNA:   3'- -UGCUGCGaua------AGUUCUGGa---------CGUUCGg -5'
26464 3' -50.2 NC_005357.1 + 21802 0.66 0.892888
Target:  5'- aACGAgCGCaGgcCGAcaccGACCUGCGAcGCCg -3'
miRNA:   3'- -UGCU-GCGaUaaGUU----CUGGACGUU-CGG- -5'
26464 3' -50.2 NC_005357.1 + 16108 0.67 0.860186
Target:  5'- cGCGguGCGCg--UCAAGACCgUGCcuGUCc -3'
miRNA:   3'- -UGC--UGCGauaAGUUCUGG-ACGuuCGG- -5'
26464 3' -50.2 NC_005357.1 + 22229 0.68 0.81337
Target:  5'- -gGGCGCUGc-CAAGACCgaggGCGacgacaaggcgaAGCCg -3'
miRNA:   3'- ugCUGCGAUaaGUUCUGGa---CGU------------UCGG- -5'
26464 3' -50.2 NC_005357.1 + 24807 0.66 0.892888
Target:  5'- cACGAUGCggcaaacaUCGAGGCCgGUAucgacaacgcgcAGCCg -3'
miRNA:   3'- -UGCUGCGaua-----AGUUCUGGaCGU------------UCGG- -5'
26464 3' -50.2 NC_005357.1 + 28280 0.68 0.803318
Target:  5'- aACG-CGCUGgaac-GGCCggaagGCAAGCCg -3'
miRNA:   3'- -UGCuGCGAUaaguuCUGGa----CGUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 10897 0.66 0.880355
Target:  5'- -aGGCGCUGUUuccacggcaacacagCGAGGCCcagcaGCAcGCCg -3'
miRNA:   3'- ugCUGCGAUAA---------------GUUCUGGa----CGUuCGG- -5'
26464 3' -50.2 NC_005357.1 + 24953 0.66 0.900335
Target:  5'- uCGcCGCUGUUCGugcAGGCCcugGCGuggcaccuGGCCu -3'
miRNA:   3'- uGCuGCGAUAAGU---UCUGGa--CGU--------UCGG- -5'
26464 3' -50.2 NC_005357.1 + 18165 0.67 0.860186
Target:  5'- cCGGCGCcacgcUCAAGGug-GCAAGCCg -3'
miRNA:   3'- uGCUGCGaua--AGUUCUggaCGUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 32789 0.67 0.842194
Target:  5'- cGCGugGCUGcUCAAcguguaccgcGACUUGaAGGCCc -3'
miRNA:   3'- -UGCugCGAUaAGUU----------CUGGACgUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 39940 0.67 0.842194
Target:  5'- uCGGCGCUcgaAUUCaAAGACCgccuugUGCAGcacGCCu -3'
miRNA:   3'- uGCUGCGA---UAAG-UUCUGG------ACGUU---CGG- -5'
26464 3' -50.2 NC_005357.1 + 26874 0.69 0.75029
Target:  5'- gACGGCGCcAUUgAccuGGACgUGgAGGCCg -3'
miRNA:   3'- -UGCUGCGaUAAgU---UCUGgACgUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 11514 0.72 0.589157
Target:  5'- aGCGccuGCGCUGgcgUGAGGcCCUGCGAGCg -3'
miRNA:   3'- -UGC---UGCGAUaa-GUUCU-GGACGUUCGg -5'
26464 3' -50.2 NC_005357.1 + 31262 0.66 0.877105
Target:  5'- gGCGACGUgaUAUUCGuuGACCccgacgugGCAgcgaAGCCu -3'
miRNA:   3'- -UGCUGCG--AUAAGUu-CUGGa-------CGU----UCGG- -5'
26464 3' -50.2 NC_005357.1 + 32591 0.69 0.728037
Target:  5'- cCGACGCUGUgacCAAGcugGCCcGCGucaagGGCCg -3'
miRNA:   3'- uGCUGCGAUAa--GUUC---UGGaCGU-----UCGG- -5'
26464 3' -50.2 NC_005357.1 + 9537 0.69 0.726911
Target:  5'- uGCGGCcCUGUUCGGccagugcGAUCUGCucGCCg -3'
miRNA:   3'- -UGCUGcGAUAAGUU-------CUGGACGuuCGG- -5'
26464 3' -50.2 NC_005357.1 + 12682 0.69 0.716741
Target:  5'- -aGGCGCgugUCGAGGCCcGCcuugauAGCCu -3'
miRNA:   3'- ugCUGCGauaAGUUCUGGaCGu-----UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.