miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26464 3' -50.2 NC_005357.1 + 33005 1.12 0.001504
Target:  5'- aACGACGCUAUUCAAGACCUGCAAGCCc -3'
miRNA:   3'- -UGCUGCGAUAAGUUCUGGACGUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 22229 0.68 0.81337
Target:  5'- -gGGCGCUGc-CAAGACCgaggGCGacgacaaggcgaAGCCg -3'
miRNA:   3'- ugCUGCGAUaaGUUCUGGa---CGU------------UCGG- -5'
26464 3' -50.2 NC_005357.1 + 39940 0.67 0.842194
Target:  5'- uCGGCGCUcgaAUUCaAAGACCgccuugUGCAGcacGCCu -3'
miRNA:   3'- uGCUGCGA---UAAG-UUCUGG------ACGUU---CGG- -5'
26464 3' -50.2 NC_005357.1 + 16156 0.66 0.900335
Target:  5'- cGCGAUGCg---CGAG-CCgacCAGGCCg -3'
miRNA:   3'- -UGCUGCGauaaGUUCuGGac-GUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 14970 0.73 0.520612
Target:  5'- gGCGGCGCgcuggCAuaccagcgccaGGGCCUGC-GGCCg -3'
miRNA:   3'- -UGCUGCGauaa-GU-----------UCUGGACGuUCGG- -5'
26464 3' -50.2 NC_005357.1 + 8452 0.72 0.554574
Target:  5'- cGCGAUGUcggcgUCGAGgugGCCUGCGAuGCCg -3'
miRNA:   3'- -UGCUGCGaua--AGUUC---UGGACGUU-CGG- -5'
26464 3' -50.2 NC_005357.1 + 2051 0.71 0.635784
Target:  5'- gGCGACGauggAUUCAAgGGCCUGU-AGCUu -3'
miRNA:   3'- -UGCUGCga--UAAGUU-CUGGACGuUCGG- -5'
26464 3' -50.2 NC_005357.1 + 31714 0.7 0.682344
Target:  5'- gACGACGC-AUUCAagcaaucggccgAGGCCgUGCGcgcuGCCg -3'
miRNA:   3'- -UGCUGCGaUAAGU------------UCUGG-ACGUu---CGG- -5'
26464 3' -50.2 NC_005357.1 + 35058 0.69 0.716741
Target:  5'- aACGACGUgAUUCAcGACCUGgCGuGGCa -3'
miRNA:   3'- -UGCUGCGaUAAGUuCUGGAC-GU-UCGg -5'
26464 3' -50.2 NC_005357.1 + 28280 0.68 0.803318
Target:  5'- aACG-CGCUGgaac-GGCCggaagGCAAGCCg -3'
miRNA:   3'- -UGCuGCGAUaaguuCUGGa----CGUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 41821 0.69 0.716741
Target:  5'- cACGGCGCUGcuggccGACCcGCAGGCg -3'
miRNA:   3'- -UGCUGCGAUaaguu-CUGGaCGUUCGg -5'
26464 3' -50.2 NC_005357.1 + 25986 0.69 0.716741
Target:  5'- uACGACGCcgUGUUCAAcGCCgccgGCGauuaccccgcGGCCg -3'
miRNA:   3'- -UGCUGCG--AUAAGUUcUGGa---CGU----------UCGG- -5'
26464 3' -50.2 NC_005357.1 + 26601 0.77 0.321851
Target:  5'- gACGGCG-UGUUCGAGuCCUGCGcggugguGGCCg -3'
miRNA:   3'- -UGCUGCgAUAAGUUCuGGACGU-------UCGG- -5'
26464 3' -50.2 NC_005357.1 + 13083 0.69 0.728037
Target:  5'- cCGGCGCgugGUUCGAGgacuugGCCgGCGAccGCCa -3'
miRNA:   3'- uGCUGCGa--UAAGUUC------UGGaCGUU--CGG- -5'
26464 3' -50.2 NC_005357.1 + 30395 0.76 0.357499
Target:  5'- gAC-ACGCUGggCAAGACCUcGCcGGCCa -3'
miRNA:   3'- -UGcUGCGAUaaGUUCUGGA-CGuUCGG- -5'
26464 3' -50.2 NC_005357.1 + 14269 0.7 0.682344
Target:  5'- aACGGCGUgg-UCGAucuGACCaccgGCAAGCUg -3'
miRNA:   3'- -UGCUGCGauaAGUU---CUGGa---CGUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 26874 0.69 0.75029
Target:  5'- gACGGCGCcAUUgAccuGGACgUGgAGGCCg -3'
miRNA:   3'- -UGCUGCGaUAAgU---UCUGgACgUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 13621 0.67 0.83282
Target:  5'- gACGGCGCgcuggcugcUCAAGAUCggcaaccaggGCAAGCg -3'
miRNA:   3'- -UGCUGCGaua------AGUUCUGGa---------CGUUCGg -5'
26464 3' -50.2 NC_005357.1 + 34467 0.74 0.444961
Target:  5'- cACGAUGCgcgcCGAGGCCacggGCAAGCUg -3'
miRNA:   3'- -UGCUGCGauaaGUUCUGGa---CGUUCGG- -5'
26464 3' -50.2 NC_005357.1 + 35154 0.71 0.620601
Target:  5'- uACGGCcccgaggccaagcaGCaGUUCAAGACCUGgGcGGCCg -3'
miRNA:   3'- -UGCUG--------------CGaUAAGUUCUGGACgU-UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.