Results 21 - 26 of 26 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 26464 | 5' | -52.6 | NC_005357.1 | + | 38049 | 0.67 | 0.661355 |
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Target: 5'- cGCGACG-GCGccUGGCUGCGCAuccGCc -3' miRNA: 3'- -CGCUGUaCGUc-ACCGACGUGUua-CGu -5' |
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| 26464 | 5' | -52.6 | NC_005357.1 | + | 26139 | 0.68 | 0.649759 |
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Target: 5'- cGCGGCAgauuuggcGCAGcGGCUcGCcgucuGCGAUGCGg -3' miRNA: 3'- -CGCUGUa-------CGUCaCCGA-CG-----UGUUACGU- -5' |
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| 26464 | 5' | -52.6 | NC_005357.1 | + | 25597 | 0.68 | 0.649759 |
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Target: 5'- uGCGGCccagGCAGUGGCaaccacggcgGCGCGGUcGCc -3' miRNA: 3'- -CGCUGua--CGUCACCGa---------CGUGUUA-CGu -5' |
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| 26464 | 5' | -52.6 | NC_005357.1 | + | 33759 | 0.68 | 0.638146 |
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Target: 5'- gGCGGCGcaGCAGccGCUGCACAcaGCGa -3' miRNA: 3'- -CGCUGUa-CGUCacCGACGUGUuaCGU- -5' |
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| 26464 | 5' | -52.6 | NC_005357.1 | + | 21189 | 0.68 | 0.614911 |
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Target: 5'- cGCGGCcUGCuGcUGGuCUGCGCGuUGCu -3' miRNA: 3'- -CGCUGuACGuC-ACC-GACGUGUuACGu -5' |
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| 26464 | 5' | -52.6 | NC_005357.1 | + | 7123 | 0.68 | 0.603314 |
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Target: 5'- uGCGugAUGCccAGcGGUUGCAUAAggGCGc -3' miRNA: 3'- -CGCugUACG--UCaCCGACGUGUUa-CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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