miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26465 3' -56.9 NC_005357.1 + 32886 1.11 0.000341
Target:  5'- gAGCAGAUCGCACUGGCCGAACAGGGCc -3'
miRNA:   3'- -UCGUCUAGCGUGACCGGCUUGUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 1867 0.78 0.094445
Target:  5'- uGCAGGUUcagcccguggccgGCGCUGGCCGggU-GGGCg -3'
miRNA:   3'- uCGUCUAG-------------CGUGACCGGCuuGuCCCG- -5'
26465 3' -56.9 NC_005357.1 + 9492 0.76 0.119145
Target:  5'- cAGCcguGGUCGCcCUGGCCGAACAGccagccgugcaGGCc -3'
miRNA:   3'- -UCGu--CUAGCGuGACCGGCUUGUC-----------CCG- -5'
26465 3' -56.9 NC_005357.1 + 21264 0.74 0.162348
Target:  5'- cAGCAGGcCGCGCU-GuuGAAcCAGGGCg -3'
miRNA:   3'- -UCGUCUaGCGUGAcCggCUU-GUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 1482 0.74 0.16691
Target:  5'- uGGCAGGccgggguaUCGCaguGCUGGUCGGACAuGGCg -3'
miRNA:   3'- -UCGUCU--------AGCG---UGACCGGCUUGUcCCG- -5'
26465 3' -56.9 NC_005357.1 + 14647 0.74 0.179803
Target:  5'- cGCGGcgCGCGCUucguguacguguccGaGCCGGACgAGGGCa -3'
miRNA:   3'- uCGUCuaGCGUGA--------------C-CGGCUUG-UCCCG- -5'
26465 3' -56.9 NC_005357.1 + 8612 0.72 0.231154
Target:  5'- aAGCuGGUUGCGCUucucGGCCGcuGCGGuGGCg -3'
miRNA:   3'- -UCGuCUAGCGUGA----CCGGCu-UGUC-CCG- -5'
26465 3' -56.9 NC_005357.1 + 5234 0.72 0.237358
Target:  5'- cAGCAGuUCGCGCaguucGGCCGGcagguCGGGGUc -3'
miRNA:   3'- -UCGUCuAGCGUGa----CCGGCUu----GUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 35219 0.72 0.241784
Target:  5'- cGCAGAugcugccguggacaUCGCGCUgucccGGCUGcguCAGGGCg -3'
miRNA:   3'- uCGUCU--------------AGCGUGA-----CCGGCuu-GUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 35192 0.71 0.263576
Target:  5'- cGGCc---CGCGCcagUGGCCGAaguuGCAGGGCu -3'
miRNA:   3'- -UCGucuaGCGUG---ACCGGCU----UGUCCCG- -5'
26465 3' -56.9 NC_005357.1 + 28557 0.71 0.277545
Target:  5'- cGGCugucGAUCGCAUaaaGGCCGAaaccuuccgGCAGGcGCa -3'
miRNA:   3'- -UCGu---CUAGCGUGa--CCGGCU---------UGUCC-CG- -5'
26465 3' -56.9 NC_005357.1 + 1937 0.71 0.292097
Target:  5'- cGCGGAUCGUcugcggguuCUGGUCGAGCGcGcGGCc -3'
miRNA:   3'- uCGUCUAGCGu--------GACCGGCUUGU-C-CCG- -5'
26465 3' -56.9 NC_005357.1 + 7611 0.7 0.299595
Target:  5'- cAGCAcguGGUCGCGCaGcGCCGGACAcGuGGCc -3'
miRNA:   3'- -UCGU---CUAGCGUGaC-CGGCUUGU-C-CCG- -5'
26465 3' -56.9 NC_005357.1 + 11510 0.7 0.299595
Target:  5'- gGGCAGcgCcuGCGCUGGCgugaggcccugCGAGC-GGGCa -3'
miRNA:   3'- -UCGUCuaG--CGUGACCG-----------GCUUGuCCCG- -5'
26465 3' -56.9 NC_005357.1 + 6264 0.7 0.30724
Target:  5'- uGCGGuugaucugCGCGCUgggcaGGCCGAACAGGucGCc -3'
miRNA:   3'- uCGUCua------GCGUGA-----CCGGCUUGUCC--CG- -5'
26465 3' -56.9 NC_005357.1 + 1088 0.7 0.315033
Target:  5'- cGGUAGAUUGCcUUGGCCGugucGCGcGGCa -3'
miRNA:   3'- -UCGUCUAGCGuGACCGGCu---UGUcCCG- -5'
26465 3' -56.9 NC_005357.1 + 15693 0.7 0.315033
Target:  5'- cAGCGGG-CGCGCUGGCgGuGGCccGGCu -3'
miRNA:   3'- -UCGUCUaGCGUGACCGgC-UUGucCCG- -5'
26465 3' -56.9 NC_005357.1 + 26233 0.69 0.339304
Target:  5'- cGCAGuuuugCGCGCgucGCCGAagGCAcGGGCa -3'
miRNA:   3'- uCGUCua---GCGUGac-CGGCU--UGU-CCCG- -5'
26465 3' -56.9 NC_005357.1 + 25755 0.69 0.34769
Target:  5'- cGCuGggCGCGCU-GCUGGGCGGcGGCa -3'
miRNA:   3'- uCGuCuaGCGUGAcCGGCUUGUC-CCG- -5'
26465 3' -56.9 NC_005357.1 + 17670 0.69 0.364903
Target:  5'- uGGCAGGUCauuccgacaGCAUgggucgaGGCCGcGCAGGcGCg -3'
miRNA:   3'- -UCGUCUAG---------CGUGa------CCGGCuUGUCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.